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WormBase Tree Display for Gene: WBGene00016058

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Name Class

WBGene00016058SMapS_parentSequenceC24D10
IdentityVersion2
NameCGC_namenspd-3Person_evidenceWBPerson1983
Sequence_nameC24D10.7
Molecular_nameC24D10.7
C24D10.7.1
CE16879
Other_nameCELE_C24D10.7Accession_evidenceNDBBX284604
Public_namenspd-3
DB_infoDatabaseAceViewgene4F928
WormQTLgeneWBGene00016058
WormFluxgeneWBGene00016058
NDBlocus_tagCELE_C24D10.7
PanthergeneCAEEL|WormBase=WBGene00016058|UniProtKB=G5EG23
familyPTHR35375
NCBIgene259569
RefSeqproteinNM_068329.5
TREEFAMTREEFAM_IDTF319437
TrEMBLUniProtAccG5EG23
UniProt_GCRPUniProtAccG5EG23
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:56WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
203 Oct 2006 09:54:23WBPerson2970Name_changeCGC_namenspd-3
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspd
AlleleWBVar01499754
WBVar01499395
WBVar01499396
WBVar01894107
WBVar01894108
WBVar01499242
WBVar01499633
WBVar01500245
RNASeq_FPKM (74)
OrthologWBGene00037331Caenorhabditis briggsaeFrom_analysis (2)
WBGene00056605Caenorhabditis remaneiFrom_analysis (3)
WBGene00051079Caenorhabditis remaneiFrom_analysis (2)
WBGene00039798Caenorhabditis briggsaeFrom_analysis (2)
WBGene00057463Caenorhabditis remaneiFrom_analysis (3)
WBGene00057292Caenorhabditis remaneiFrom_analysis (3)
WBGene00058098Caenorhabditis remaneiFrom_analysis (2)
WBGene00057476Caenorhabditis remaneiFrom_analysis (3)
WBGene00108752Pristionchus pacificusFrom_analysisOMA
WBGene00132634Caenorhabditis japonicaFrom_analysis (3)
WBGene00134984Caenorhabditis japonicaFrom_analysis (3)
WBGene00127116Caenorhabditis japonicaFrom_analysis (3)
WBGene00137025Caenorhabditis japonicaFrom_analysis (3)
WBGene00141340Caenorhabditis brenneriFrom_analysis (3)
WBGene00154820Caenorhabditis brenneriFrom_analysis (3)
WBGene00158606Caenorhabditis brenneriFrom_analysis (3)
WBGene00162485Caenorhabditis brenneriFrom_analysis (2)
WBGene00063307Caenorhabditis remaneiFrom_analysis (2)
WBGene00061696Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00129669Caenorhabditis japonicaFrom_analysis (2)
WBGene00157609Caenorhabditis brenneriFrom_analysis (2)
WBGene00209397Caenorhabditis japonicaFrom_analysis (2)
WBGene00212157Caenorhabditis japonicaFrom_analysis (2)
WBGene00206737Caenorhabditis japonicaFrom_analysis (2)
WBGene00070580Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00218217Caenorhabditis japonicaFrom_analysis (2)
CSP21.g13650Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8999Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1026Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g11233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8784Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19809Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11611Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18488Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g3744Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8802Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g16963Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18304Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g19427Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g21288Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g25927Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4282Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g6652Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g954Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10573Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g10620Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12081Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5804Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5908Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1422Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16779Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20346Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20347Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5982Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19813Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5128Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g5708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3405Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00392.g10200Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00978.g15206Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15316.g24995Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4453Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4456Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g6835Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7198Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11213Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17139Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00474.g11836Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04402Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05955Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05967Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_13089Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005908Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_005922Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_006111Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011090Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011095Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019920Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_023075Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025061Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026048Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30021400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g10363Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00214546Caenorhabditis japonicaFrom_analysisWormBase-Compara
ParalogWBGene00010633Caenorhabditis elegansFrom_analysis (2)
WBGene00012781Caenorhabditis elegansFrom_analysis (2)
WBGene00017808Caenorhabditis elegansFrom_analysis (2)
WBGene00017386Caenorhabditis elegansFrom_analysis (2)
WBGene00022754Caenorhabditis elegansFrom_analysis (2)
WBGene00021280Caenorhabditis elegansFrom_analysis (2)
WBGene00020860Caenorhabditis elegansFrom_analysis (2)
WBGene00020715Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00043147Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionEnriched in several structures, including amphid sheath cell; intestine; muscle cell; neurons; and sperm based on RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-seven chemicals including Ethanol; methylmercury hydroxide; and methylmercuric chloride based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC24D10.7
Corresponding_transcriptC24D10.7.1
Other_sequenceCRC01200_1
CR01622
Associated_featureWBsf230063
Experimental_infoRNAi_resultWBRNAi00041089Inferred_automaticallyRNAi_primary
WBRNAi00011109Inferred_automaticallyRNAi_primary
WBRNAi00011108Inferred_automaticallyRNAi_primary
WBRNAi00041090Inferred_automaticallyRNAi_primary
WBRNAi00022616Inferred_automaticallyRNAi_primary
Expr_patternExpr1017312
Expr1145125
Expr2014480
Expr2032719
Drives_constructWBCnstr00028355
Construct_productWBCnstr00028355
Microarray_results (22)
Expression_cluster (215)
Interaction (211)
Map_infoMapIVPosition1.53533
PositivePositive_cloneC24D10Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene