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WormBase Tree Display for Gene: WBGene00012781

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Name Class

WBGene00012781SMapS_parentSequenceY43C5A
IdentityVersion2
NameCGC_namenspd-7Person_evidenceWBPerson1983
Sequence_nameY43C5A.1
Molecular_nameY43C5A.1
Y43C5A.1.1
CE19150
Other_nameCELE_Y43C5A.1Accession_evidenceNDBBX284604
Public_namenspd-7
DB_infoDatabaseAceViewgene4L34
WormQTLgeneWBGene00012781
WormFluxgeneWBGene00012781
NDBlocus_tagCELE_Y43C5A.1
PanthergeneCAEEL|WormBase=WBGene00012781|UniProtKB=Q9XXF2
familyPTHR35375
NCBIgene177910
RefSeqproteinNM_069481.6
TREEFAMTREEFAM_IDTF319437
TrEMBLUniProtAccQ9XXF2
UniProt_GCRPUniProtAccQ9XXF2
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
203 Oct 2006 09:54:22WBPerson2970Name_changeCGC_namenspd-7
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnspd
Allele (15)
RNASeq_FPKM (74)
OrthologWBGene00037331Caenorhabditis briggsaeFrom_analysis (3)
WBGene00056605Caenorhabditis remaneiFrom_analysis (3)
WBGene00039798Caenorhabditis briggsaeFrom_analysis (3)
WBGene00057463Caenorhabditis remaneiFrom_analysis (4)
WBGene00057292Caenorhabditis remaneiFrom_analysis (4)
WBGene00058098Caenorhabditis remaneiFrom_analysis (3)
WBGene00057476Caenorhabditis remaneiFrom_analysis (4)
WBGene00108752Pristionchus pacificusFrom_analysisOMA
WBGene00132634Caenorhabditis japonicaFrom_analysis (4)
WBGene00134984Caenorhabditis japonicaFrom_analysis (4)
WBGene00127116Caenorhabditis japonicaFrom_analysis (3)
WBGene00137025Caenorhabditis japonicaFrom_analysis (4)
WBGene00141340Caenorhabditis brenneriFrom_analysis (4)
WBGene00154820Caenorhabditis brenneriFrom_analysis (4)
WBGene00158606Caenorhabditis brenneriFrom_analysis (4)
WBGene00162485Caenorhabditis brenneriFrom_analysis (3)
WBGene00027837Caenorhabditis briggsaeFrom_analysisOMA
WBGene00037471Caenorhabditis briggsaeFrom_analysisOMA
WBGene00061696Caenorhabditis remaneiFrom_analysis (2)
WBGene00209397Caenorhabditis japonicaFrom_analysis (3)
WBGene00157609Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00051079Caenorhabditis remaneiFrom_analysis (2)
WBGene00212157Caenorhabditis japonicaFrom_analysis (3)
WBGene00206737Caenorhabditis japonicaFrom_analysis (3)
WBGene00070580Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00218217Caenorhabditis japonicaFrom_analysis (2)
CSP21.g13650Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP21.g8999Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g1026Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g11233Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g8784Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g19809Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g11611Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g18488Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g3744Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP29.g8802Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10189Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g16963Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g18304Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g19427Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g21288Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g25927Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g4282Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g6652Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP31.g954Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g10573Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g10620Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g12081Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5804Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP32.g5908Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1422Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g16779Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20346Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g20347Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP38.g5982Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g19813Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g5128Caenorhabditis tribulationisFrom_analysisWormBase-Compara
CSP40.g5708Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00071.g3405Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00392.g10200Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_00978.g15206Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_15316.g24995Caenorhabditis angariaFrom_analysisWormBase-Compara
Cnig_chr_II.g4453Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g4456Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g6835Caenorhabditis nigoniFrom_analysisWormBase-Compara
Cnig_chr_II.g7198Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g11213Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp11.Scaffold630.g17139Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00474.g11836Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_04402Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05955Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_05967Caenorhabditis latensFrom_analysisWormBase-Compara
FL83_13089Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_005908Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_005922Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_006111Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011090Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_011095Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_019920Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_023075Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_025061Caenorhabditis remaneiFrom_analysisWormBase-Compara
GCK72_026048Caenorhabditis remaneiFrom_analysisWormBase-Compara
Sp34_30021400Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g11554Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00129669Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00214546Caenorhabditis japonicaFrom_analysisWormBase-Compara
WBGene00063307Caenorhabditis remaneiFrom_analysisWormBase-Compara
ParalogWBGene00010633Caenorhabditis elegansFrom_analysis (3)
WBGene00017808Caenorhabditis elegansFrom_analysis (3)
WBGene00017386Caenorhabditis elegansFrom_analysis (2)
WBGene00020715Caenorhabditis elegansFrom_analysis (2)
WBGene00021280Caenorhabditis elegansFrom_analysis (3)
WBGene00043147Caenorhabditis elegansFrom_analysis (2)
WBGene00022754Caenorhabditis elegansFrom_analysis (3)
WBGene00020860Caenorhabditis elegansFrom_analysis (3)
WBGene00016058Caenorhabditis elegansFrom_analysis (2)
Structured_descriptionAutomated_descriptionEnriched in intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-four chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY43C5A.1
Corresponding_transcriptY43C5A.1.1
Other_sequenceFG621270.1
Associated_featureWBsf997580
WBsf230707
Experimental_infoRNAi_resultWBRNAi00020518Inferred_automaticallyRNAi_primary
WBRNAi00007326Inferred_automaticallyRNAi_primary
WBRNAi00110638Inferred_automaticallyRNAi_primary
WBRNAi00056460Inferred_automaticallyRNAi_primary
WBRNAi00022554Inferred_automaticallyRNAi_primary
Expr_patternExpr1011315
Expr1159933
Expr2014484
Expr2032723
Drives_constructWBCnstr00029845
Construct_productWBCnstr00029845
Microarray_results (14)
Expression_cluster (220)
Interaction (107)
Map_infoMapIVPosition4.56484
PositivePositive_cloneY43C5AInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene