WormBase Tree Display for Gene: WBGene00004926

WBGene00004926 Evidence: Person_evidence: WBPerson508
  SMap: S_parent: Sequence: C08G5
  Identity: Version: 1
    Name: CGC_name: snt-6 Person_evidence: WBPerson508
      Sequence_name: C08G5.4
      Molecular_name: C08G5.4a
        C08G5.4a.1
        CE34672
        C08G5.4b
        CE46215
        C08G5.4c
        CE51225
        C08G5.4b.1
        C08G5.4c.1
      Other_name: CELE_C08G5.4 Accession_evidence: NDB BX284602
      Public_name: snt-6
    DB_info: Database: AceView gene 2B30
        WormQTL gene WBGene00004926
        WormFlux gene WBGene00004926
        NDB locus_tag CELE_C08G5.4
        Panther gene CAEEL|WormBase=WBGene00004926|UniProtKB=G4RXP2
          family PTHR10024
        NCBI gene 182427
        RefSeq protein NM_001267093.2
            NM_001318279.3
            NM_001267094.2
        TrEMBL UniProtAcc Q9TZL3
            G4RXP2
            A0A0S4XQZ9
        UniProt_GCRP UniProtAcc G4RXP2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snt
    Allele (115)
    Strain: WBStrain00033195
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog: WBGene00060689 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00042441 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00097533 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00137655 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155794 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00194059 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00193413 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00155156 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00123684 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00123131 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00126931 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00137139 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00053142 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00053139 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00064868 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00054182 Caenorhabditis remanei From_analysis: TreeFam
      CBOVI.g12417 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g6923 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g14091 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP26.g6113 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15594 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP28.g15595 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g20938 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g25636 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4823 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g12203 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g14472 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g691 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g8260 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00307.g8925 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g7969 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Cnig_chr_II.g7970 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g9150 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_03013.g28754 Caenorhabditis sinica From_analysis: WormBase-Compara
      Csp5_scaffold_03013.g28755 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_09104 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_007597 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g08833 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g7586 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20021500 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g3179 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00060690 Caenorhabditis remanei From_analysis: WormBase-Compara
      WBGene00290930 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0039900 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-090601-5 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-090601-6 Danio rerio From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            PhylomeDB
      HGNC:11514 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      MGI:1859545 Mus musculus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
      RGD:62013 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            PhylomeDB
    Paralog: WBGene00004921 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004922 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004923 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004924 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004925 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011682 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004316 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006306 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020861 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of human SYT7 (synaptotagmin 7). Paper_evidence: WBPaper00065943
          Curator_confirmed (2)
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C08G5.4a
      C08G5.4b
      C08G5.4c
    Corresponding_CDS_history: C08G5.4:wp104
    Corresponding_transcript: C08G5.4a.1
      C08G5.4b.1
      C08G5.4c.1
    Other_sequence (28)
    Associated_feature: WBsf986476
      WBsf986477
      WBsf1011430
      WBsf1011431
      WBsf222625
  Experimental_info: RNAi_result: WBRNAi00010486 Inferred_automatically: RNAi_primary
      WBRNAi00028696 Inferred_automatically: RNAi_primary
      WBRNAi00112399 Inferred_automatically: RNAi_primary
      WBRNAi00040137 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012041
      Expr1032454
      Expr1144211
      Expr2015981
      Expr2034216
    Microarray_results (19)
    Expression_cluster (182)
    Interaction (51)
  Map_info: Map: II Position: -15.591 Error: 9e-05
    Positive: Positive_clone: C08G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (2)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene