WormBase Tree Display for Gene: WBGene00003729

WBGene00003729 SMap: S_parent: Sequence: CHROMOSOME_X
  Identity: Version: 1
    Name: CGC_name: nhx-1
      Sequence_name: B0395.1
      Molecular_name: B0395.1
        B0395.1.1
        CE43178
        B0395.1.2
      Other_name: CELE_B0395.1 Accession_evidence: NDB BX284606
      Public_name: nhx-1
    DB_info: Database: AceView gene XQ635
        WormQTL gene WBGene00003729
        WormFlux gene WBGene00003729
        NDB locus_tag CELE_B0395.1
        Panther gene CAEEL|WormBase=WBGene00003729|UniProtKB=G5EDH8
          family PTHR10110
        NCBI gene 181680
        RefSeq protein NM_078221.8
        TREEFAM TREEFAM_ID TF317212
        TrEMBL UniProtAcc G5EDH8
        UniProt_GCRP UniProtAcc G5EDH8
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:32 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nhx
    Allele (72)
    RNASeq_FPKM (74)
    GO_annotation (18)
    Ortholog: WBGene00063270 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00036357 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00141584 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00153384 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00139240 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00146688 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00194316 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00191586 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00190248 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00143982 Caenorhabditis brenneri From_analysis: TreeFam
      WBGene00131430 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00137763 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00122315 Caenorhabditis japonica From_analysis: TreeFam
      WBGene00053156 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00058383 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00063693 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00075423 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00057660 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00066338 Caenorhabditis remanei From_analysis: TreeFam
      WBGene00136479 Caenorhabditis japonica From_analysis: TreeFam
      CBOVI.g3449 Caenorhabditis bovis From_analysis: WormBase-Compara
      CBOVI.g3450 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g4249 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16122 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g4719 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP29.g4720 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g8671 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g13797 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g11665 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10003 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g11709 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00090.g4031 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-nhx-1 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13379 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00839.g15949 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_02397 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023149 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g01257 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22746 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_X0039100 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrX_pilon.g20831 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00135001 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00212511 Caenorhabditis japonica From_analysis: WormBase-Compara
      WBGene00257979 Strongyloides ratti From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-080225-42 Danio rerio From_analysis: OMA
            OrthoFinder
            Panther
      MGI:102462 Mus musculus From_analysis: OrthoFinder
            Panther
      RGD:3718 Rattus norvegicus From_analysis: OrthoFinder
            Panther
    Paralog: WBGene00003736 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003733 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003735 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00003731 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003943 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003730 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003734 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00003732 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description (2)
  Molecular_info: Corresponding_CDS: B0395.1
    Corresponding_CDS_history: B0395.1:wp80
      B0395.1:wp196
    Corresponding_transcript: B0395.1.1
      B0395.1.2
    Other_sequence (17)
    Associated_feature: WBsf648838
      WBsf648839
      WBsf663673
      WBsf236825
  Experimental_info: RNAi_result: WBRNAi00039018 Inferred_automatically: RNAi_primary
      WBRNAi00024396 Inferred_automatically: RNAi_primary
      WBRNAi00024397 Inferred_automatically: RNAi_primary
      WBRNAi00027146 Inferred_automatically: RNAi_primary
      WBRNAi00009746 Inferred_automatically: RNAi_primary
      WBRNAi00001533 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2232
      Expr2240
      Expr10075
      Expr1015368
      Expr1031741
      Expr1143180
      Expr2014253
      Expr2032493
    Drives_construct: WBCnstr00010711
      WBCnstr00010720
      WBCnstr00015047
      WBCnstr00035912
    Construct_product: WBCnstr00010720
      WBCnstr00035912
    Microarray_results (19)
    Expression_cluster (110)
    Interaction: WBInteraction000134079
      WBInteraction000362601
      WBInteraction000410939
  Map_info: Map: X Position: 23.335 Error: 0.165455
    Positive: Positive_clone: B0395 Inferred_automatically: From CDS info
            From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (4)
  Remark: Sequence connection from [Nehrke K, Melvin J]
    Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene