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WormBase Tree Display for Gene: WBGene00004925

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Name Class

WBGene00004925EvidencePerson_evidenceWBPerson508
SMapS_parentSequenceR12A1
IdentityVersion1
NameCGC_namesnt-5Person_evidenceWBPerson508
Sequence_nameR12A1.2
Molecular_name (12)
Other_nameCELE_R12A1.2Accession_evidenceNDBBX284605
Public_namesnt-5
DB_infoDatabaseAceViewgene5B872
WormQTLgeneWBGene00004925
WormFluxgeneWBGene00004925
NDBlocus_tagCELE_R12A1.2
PanthergeneCAEEL|WormBase=WBGene00004925|UniProtKB=O16700
familyPTHR10024
NCBIgene178631
RefSeqproteinNM_001313245.4
NM_071008.5
NM_001313246.3
NM_001313247.3
TrEMBLUniProtAccA0A0K3AY30
A0A0K3AV38
A0A0K3AST7
O16700
UniProt_GCRPUniProtAccO16700
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classsnt
Allele (363)
StrainWBStrain00033077
RNASeq_FPKM (74)
GO_annotation (17)
OrthologWBGene00053139Caenorhabditis remaneiFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00028699Caenorhabditis briggsaeFrom_analysisOrthoMCL
OMA
Inparanoid_8
WormBase-Compara
WBGene00155794Caenorhabditis brenneriFrom_analysisOMA
TreeFam
Inparanoid_8
WormBase-Compara
WBGene00118488Pristionchus pacificusFrom_analysisOMA
Inparanoid_8
WormBase-Compara
WBGene00123131Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00054182Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00155156Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00193413Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00194059Caenorhabditis brenneriFrom_analysisTreeFam
WBGene00123684Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00137139Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00126931Caenorhabditis japonicaFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00137655Caenorhabditis japonicaFrom_analysisTreeFam
WBGene00064868Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00060689Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00053142Caenorhabditis remaneiFrom_analysisTreeFam
WBGene00225619Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g1323Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g1248Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g5949Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP26.g5950Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g6804Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g14454Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g10597Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g15074Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g12080Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g15728Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g20929Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_12756.g23917Caenorhabditis angariaFrom_analysisWormBase-Compara
Cang_2012_03_13_16838.g25497Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-snt-5Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold506.g2443Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_00786.g15465Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_08345Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_018987Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g07194Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g21188Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_50048210Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrV_pilon.g13214Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00244116Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00264123Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00287599Trichuris murisFrom_analysisWormBase-Compara
ZFIN:ZDB-GENE-040822-6Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-090601-3Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-041210-297Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-031002-18Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-090601-1Danio rerioFrom_analysisOrthoFinder
PhylomeDB
ZFIN:ZDB-GENE-090601-2Danio rerioFrom_analysisOrthoFinder
PhylomeDB
HGNC:11511Homo sapiensFrom_analysisOrthoFinder
PhylomeDB
HGNC:19265Homo sapiensFrom_analysisOrthoFinder
PhylomeDB
HGNC:18638Homo sapiensFrom_analysisOrthoFinder
PhylomeDB
HGNC:19266Homo sapiensFrom_analysisOrthoFinder
PhylomeDB
MGI:99665Mus musculusFrom_analysisOrthoFinder
PhylomeDB
MGI:1859544Mus musculusFrom_analysisOrthoFinder
PhylomeDB
MGI:1859546Mus musculusFrom_analysisOrthoFinder
PhylomeDB
MGI:1926373Mus musculusFrom_analysisOrthoFinder
PhylomeDB
RGD:3805Rattus norvegicusFrom_analysisOrthoFinder
PhylomeDB
RGD:621169Rattus norvegicusFrom_analysisOrthoFinder
PhylomeDB
RGD:62012Rattus norvegicusFrom_analysisOrthoFinder
PhylomeDB
RGD:62041Rattus norvegicusFrom_analysisOrthoFinder
PhylomeDB
ParalogWBGene00004921Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004922Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004923Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004924Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004926Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00011682Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00004316Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00006306Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00020861Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of several human genes including SYT3 (synaptotagmin 3); SYT6 (synaptotagmin 6); and SYT9 (synaptotagmin 9).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR12A1.2a
R12A1.2b
R12A1.2c
R12A1.2d
Corresponding_transcriptR12A1.2a.1
R12A1.2b.1
R12A1.2c.1
R12A1.2d.1
Other_sequence (28)
Associated_featureWBsf668760
WBsf718284
WBsf999320
WBsf999321
WBsf1019174
WBsf233331
Experimental_infoRNAi_resultWBRNAi00017785Inferred_automaticallyRNAi_primary
WBRNAi00112398Inferred_automaticallyRNAi_primary
WBRNAi00051825Inferred_automaticallyRNAi_primary
WBRNAi00095697Inferred_automaticallyRNAi_primary
WBRNAi00034876Inferred_automaticallyRNAi_primary
Expr_patternExpr1010564
Expr1155484
Expr2015980
Expr2034215
Microarray_resultsSMD_R12A1.2
182682_at
A_12_P115615
A_12_P155540
A_12_P155541
Aff_R12A1.2
GPL13394_WBGene00004925
GPL13914_R12A1.2
GPL14144_R12A1.2_1121-1180_0.924_8_C
GPL14144_R12A1.2_1229-1288_0.956_1_A
GPL14144_R12A1.2_1323-1382_0.925_7_B
GPL19516_CGZ0032000
GPL3518_CE29448
GPL8304_CE_WBGene00004925_A
GPL8673_R12A1_2P00143
GPL8673_R12A1_2P00328
GPL8673_R12A1_2P00958
GPL9450_R12A1.2
cea2.p.122548
Expression_cluster (126)
InteractionWBInteraction000210718
WBInteraction000242791
WBInteraction000250599
WBInteraction000407493
WBInteraction000432274
WBInteraction000440448
WBInteraction000548592
Map_infoMapVPosition-19.0947Error0.071146
PositivePositive_cloneR12A1Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene