WormBase Tree Display for Gene: WBGene00012781

WBGene00012781 SMap: S_parent: Sequence: Y43C5A
  Identity: Version: 2
    Name: CGC_name: nspd-7 Person_evidence: WBPerson1983
      Sequence_name: Y43C5A.1
      Molecular_name: Y43C5A.1
        Y43C5A.1.1
        CE19150
      Other_name: CELE_Y43C5A.1 Accession_evidence: NDB BX284604
      Public_name: nspd-7
    DB_info: Database: AceView gene 4L34
        WormQTL gene WBGene00012781
        WormFlux gene WBGene00012781
        NDB locus_tag CELE_Y43C5A.1
        Panther gene CAEEL|WormBase=WBGene00012781|UniProtKB=Q9XXF2
          family PTHR35375
        NCBI gene 177910
        RefSeq protein NM_069481.6
        TREEFAM TREEFAM_ID TF319437
        TrEMBL UniProtAcc Q9XXF2
        UniProt_GCRP UniProtAcc Q9XXF2
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 03 Oct 2006 09:54:22 WBPerson2970 Name_change: CGC_name: nspd-7
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: nspd
    Allele (15)
    RNASeq_FPKM (74)
    Ortholog (87)
    Paralog: WBGene00010633 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00017808 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00017386 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00020715 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00021280 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00043147 Caenorhabditis elegans From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00022754 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00020860 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00016058 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
    Structured_description: Automated_description: Enriched in intestine; sperm; and in male based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-2; skn-1; and age-1 based on microarray and RNA-seq studies. Is affected by twenty-four chemicals including Ethanol; methylmercury hydroxide; and nicotinic acid based on RNA-seq and microarray studies. Is predicted to encode a protein with the following domains: Protein of unknown function DUF780, Caenorhabditis species and Caenorhabditis elegans protein of unknown function (DUF780). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y43C5A.1
    Corresponding_transcript: Y43C5A.1.1
    Other_sequence: FG621270.1
    Associated_feature: WBsf997580
      WBsf230707
  Experimental_info: RNAi_result (5)
    Expr_pattern: Expr1011315
      Expr1159933
      Expr2014484
      Expr2032723
    Drives_construct: WBCnstr00029845
    Construct_product: WBCnstr00029845
    Microarray_results (14)
    Expression_cluster (220)
    Interaction: WBInteraction000105582
      WBInteraction000107082
      WBInteraction000108882
      WBInteraction000112627
      WBInteraction000113050
      WBInteraction000115002
      WBInteraction000117469
      WBInteraction000121108
      WBInteraction000122191
      WBInteraction000124931
      WBInteraction000125017
      WBInteraction000125259
      WBInteraction000125790
      WBInteraction000127165
      WBInteraction000127323
      WBInteraction000133133
      WBInteraction000134574
      WBInteraction000134652
      WBInteraction000137124
      WBInteraction000139441
      WBInteraction000140209
      WBInteraction000141623
      WBInteraction000142572
      WBInteraction000143271
      WBInteraction000148832
      WBInteraction000149757
      WBInteraction000149877
      WBInteraction000156599
      WBInteraction000163583
      WBInteraction000171228
      WBInteraction000180621
      WBInteraction000182496
      WBInteraction000186958
      WBInteraction000188170
      WBInteraction000188942
      WBInteraction000189586
      WBInteraction000191315
      WBInteraction000196804
      WBInteraction000196848
      WBInteraction000199218
      WBInteraction000203591
      WBInteraction000205609
      WBInteraction000207674
      WBInteraction000211573
      WBInteraction000211869
      WBInteraction000211976
      WBInteraction000213630
      WBInteraction000214137
      WBInteraction000222381
      WBInteraction000224013
      WBInteraction000224065
      WBInteraction000225777
      WBInteraction000226890
      WBInteraction000227376
      WBInteraction000228231
      WBInteraction000232067
      WBInteraction000232418
      WBInteraction000233482
      WBInteraction000237642
      WBInteraction000240274
      WBInteraction000246049
      WBInteraction000246289
      WBInteraction000247555
      WBInteraction000250205
      WBInteraction000252434
      WBInteraction000253447
      WBInteraction000253557
      WBInteraction000254918
      WBInteraction000257902
      WBInteraction000258865
      WBInteraction000261943
      WBInteraction000264099
      WBInteraction000264373
      WBInteraction000273616
      WBInteraction000274896
      WBInteraction000285686
      WBInteraction000286731
      WBInteraction000290906
      WBInteraction000291233
      WBInteraction000295448
      WBInteraction000300743
      WBInteraction000306117
      WBInteraction000317655
      WBInteraction000319158
      WBInteraction000319709
      WBInteraction000324695
      WBInteraction000334590
      WBInteraction000342619
      WBInteraction000347201
      WBInteraction000349137
      WBInteraction000349724
      WBInteraction000353946
      WBInteraction000356938
      WBInteraction000366015
      WBInteraction000374264
      WBInteraction000376170
      WBInteraction000378850
      WBInteraction000392694
      WBInteraction000393909
      WBInteraction000401288
      WBInteraction000405065
      WBInteraction000412589
      WBInteraction000428489
      WBInteraction000432694
      WBInteraction000441274
      WBInteraction000445093
      WBInteraction000445547
  Map_info: Map: IV Position: 4.56484
    Positive: Positive_clone: Y43C5A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene