WormBase Tree Display for Gene: WBGene00018717

WBGene00018717 SMap: S_parent: Sequence: F52H2
  Identity: Version: 1
    Name: Sequence_name: F52H2.5
      Molecular_name (4)
      Other_name: CELE_F52H2.5 Accession_evidence: NDB BX284606
      Public_name: F52H2.5
    DB_info: Database: AceView gene XD176
        WormQTL gene WBGene00018717
        WormFlux gene WBGene00018717
        NDB locus_tag CELE_F52H2.5
        NCBI gene 186133
        RefSeq protein NM_001392735.1
        TREEFAM TREEFAM_ID TF317407
        TrEMBL UniProtAcc O17396
        UniProt_GCRP UniProtAcc O17396
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:00 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
    Status: Live
  Gene_info: Biotype: SO:0001217
    Allele (32)
    RNASeq_FPKM (74)
    Ortholog (18)
    Structured_description: Concise_description: F52H2.5 encodes a novel protein conserved amongst nematodes. Curator_confirmed: WBPerson1843
          Date_last_updated: 06 Jan 2011 00:00:00
      Automated_description: Enriched in several structures, including germ line; germline precursor cell; intestine; mechanosensory neurons; and rectal epithelium based on microarray; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-16; daf-12; and hsf-1 based on tiling array; RNA-seq; and microarray studies. Is affected by nine chemicals including rotenone; Alovudine; and Zidovudine based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F52H2.5
    Corresponding_transcript: F52H2.5.1
      F52H2.5.2
    Associated_feature: WBsf653766
      WBsf237094
      WBsf237095
  Experimental_info: RNAi_result: WBRNAi00015439 Inferred_automatically: RNAi_primary
      WBRNAi00015438 Inferred_automatically: RNAi_primary
      WBRNAi00048025 Inferred_automatically: RNAi_primary
      WBRNAi00032639 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1017150
      Expr1038058
      Expr1151843
      Expr2004012
      Expr2022234
    Drives_construct: WBCnstr00026319
    Construct_product: WBCnstr00026319
    Microarray_results (22)
    Expression_cluster: WBPaper00031040:TGF-beta_adult_downregulated
      WBPaper00032976:dosage_compensated_genes
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040560:hpl-2_embryo_upregulated
      WBPaper00040560:hpl-2_L3_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045316:prg-1_upregulated_L4
      WBPaper00045521:Oogenic
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00048988:neuron_expressed
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00051039:germline_enriched
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053321:PGCs_enriched_NuGen
      WBPaper00053599:female_vs_male_upregulated
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055862:antimycin_damt-1(gk961032)_regulated
      WBPaper00055971:nhl-2(ok818)_25C_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058691:cfp-1(tm6369)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058691:sin-3(tm1276)_upregulated
      WBPaper00058958:100mGy-irradiation-72h_downregulated
      WBPaper00059664:srbc-48(ac23)_downregulated
      WBPaper00059763:neuron_expressed
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00061203:let-418(n3536)_downregulated
      WBPaper00061340:F_U
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:R07E4.5-skp-1_1608
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-3(bn199)_upregulated_PGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_PGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00065199:Transgeneration-starvation_regulated_starved
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_5
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032948:StarveUp3
      WBPaper00035084:L3_enriched_AIN-2_IP
      WBPaper00035873:dpy-9_regulated
      WBPaper00036123:Cadmium_regulated
      WBPaper00036286:Pattern_F
      WBPaper00040210:Chlorpyrifos_Diazinon_24C_regulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040985:AIN-2_asynchronous_muscle
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041606:CE_X.nematophila_regulated
      WBPaper00042548:miRISC_enriched
      WBPaper00045263:0.1mM-paraquat_upregulated
      WBPaper00045263:isp-1(qm150)_upregulated
      WBPaper00045960:L1-L4-lethargus_downregulated
      WBPaper00045960:L4-lethargus_downregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000328063
      WBInteraction000544083
      WBInteraction000546984
      WBInteraction000547070
      WBInteraction000547754
      WBInteraction000548242
      WBInteraction000548243
      WBInteraction000548244
  Map_info: Positive: Positive_clone: F52H2 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: X -14.3991
  Method: Gene