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WormBase Tree Display for Gene: WBGene00006929

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Name Class

WBGene00006929SMapS_parentSequenceC04F6
IdentityVersion1
NameCGC_namevit-5Person_evidenceWBPerson71
Sequence_nameC04F6.1
Molecular_nameC04F6.1
C04F6.1.1
CE03921
Other_nameCELE_C04F6.1Accession_evidenceNDBBX284606
Public_namevit-5
DB_infoDatabaseAceViewgeneXE27
WormQTLgeneWBGene00006929
WormFluxgeneWBGene00006929
NDBlocus_tagCELE_C04F6.1
PanthergeneCAEEL|WormBase=WBGene00006929|UniProtKB=P06125
familyPTHR23345
NCBIgene180630
RefSeqproteinNM_076188.7
SwissProtUniProtAccP06125
TREEFAMTREEFAM_IDTF332911
UniProt_GCRPUniProtAccP06125
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:43WBPerson1971EventImportedInitial conversion from geneace
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classvit
Allele (77)
Legacy_informationStructural gene for vitellogenin yp170A; completely sequenced.
[C.elegansII] NMK. 4.9 kb transcript, specific to adult hermaphrodite intestine, encodes 1603 aa vitellogenin yp170A. [Spieth et al. 1985; BL]
Strain (2)
RNASeq_FPKM (74)
GO_annotation00038899
00038900
00038901
00038902
00115042
00115043
Ortholog (92)
ParalogWBGene00006925Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006926Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006927Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00006928Caenorhabditis elegansFrom_analysisTreeFam
Inparanoid_8
Panther
WormBase-Compara
WBGene00006930Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionConcise_descriptionvit-5 encodes a vitellogenin, a lipid-binding protein precursor related to vertebrate vitellogenins and mammalian ApoB-100, a core LDL particle constituent; by homology, VIT-5 is predicted to function as a lipid transport protein; loss of vit-5 activity via large-scale RNA-mediated interference (RNAi) screens indicates that VIT-5 is required for embryogenesis and normal rates of postembryonic growth; VIT-5 is a major yolk component and is expressed exclusively in the adult hermaphrodite intestine from which it is secreted into the pseudocoelomic space and taken up by oocytes.Paper_evidenceWBPaper00000808
WBPaper00005654
Curator_confirmedWBPerson1843
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionPredicted to enable lipid transporter activity. Predicted to be involved in lipid transport. Predicted to be located in extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC04F6.1
Corresponding_transcriptC04F6.1.1
Other_sequence (213)
Associated_featureWBsf1004607
Experimental_infoRNAi_result (43)
Expr_patternExpr5148
Expr10734
Expr16164
Expr1018292
Expr1032944
Expr1143744
Expr2018003
Expr2036140
Drives_constructWBCnstr00002527
WBCnstr00020075
WBCnstr00034091
WBCnstr00042811
Construct_productWBCnstr00034091
Regulate_expr_clusterWBPaper00064939:vit-5(RNAi)_downregulated
WBPaper00064939:vit-5(RNAi)_upregulated
Microarray_results (22)
Expression_clusterWBPaper00005700:transmembrane_protein
WBPaper00024704:Soluble_protein
WBPaper00030894:daf-2(e1370ts)_downregulated
WBPaper00030922:glycosylated_protein
WBPaper00036738:4uM_Heme_upregulated
WBPaper00037047:aging_accelerated_insoluble_protein
WBPaper00037047:insoluble_protein
WBPaper00037109:cyclophilin-inhibitor_regulated
WBPaper00037624:ets-4(ok165)_downregulated
WBPaper00037682:sma-2_sma-4_downregulated
WBPaper00037950:all-neurons_L2-larva_expressed
WBPaper00037950:CEP-sheath-cells_adult_enriched
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00038213:E.coli(LF82)_72h_downregulated
WBPaper00038289:oocyte_protein
WBPaper00038357:atx-3_regulated_basal
WBPaper00038357:atx-3_regulated_heat-shock
WBPaper00038438:P.lumniescens_24hr_downregulated_RNAseq
WBPaper00040209:B.thuringiensis_downregulated_MY15
WBPaper00040209:B.thuringiensis_downregulated_MY18
WBPaper00040446:insoluble_protein
WBPaper00040965:lipid-droplet_associated_protein
WBPaper00040965:top50_lipid-droplet_associated_protein
WBPaper00041072:UTX-1_interacting_protein
WBPaper00041954:ethanol_upregulated
WBPaper00042215:wdr-23(tm1817)_downregulated
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00043951:insoluble_protein_day16_N2
WBPaper00044027:tyrosol_regulated
WBPaper00044037:eat-2_downregulated
WBPaper00044037:eat-2_regulated_nhr-62_dependent
WBPaper00044128:daf-2(e1370)_downregulated
WBPaper00044128:DietaryRestriction_downregulated
WBPaper00044316:HgCl2_20uM_downregulated
WBPaper00044426:rotenone_24h_downregulated
WBPaper00044501:gld-1_let-7_regulated
WBPaper00044736:rising_dev_expression
WBPaper00044746:aging_upregulated_Day5
WBPaper00044746:aging_upregulated_Day10
WBPaper00044746:aging_upregulated_HeatShock
WBPaper00044760:germline_specific
WBPaper00045017:blmp-1(tm548)_downregulated
WBPaper00045401:N.parisii_64h_downregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045521:Gender_Neutral
WBPaper00045571:germline-ablation_upregulated
WBPaper00046012:tdp-1(ok803)_downregulated
WBPaper00046337:monosomal_N2_vs_daf-2_upregulated
WBPaper00046337:polysomal_daf-2_vs_daf-2;daf-16_upregulated
WBPaper00046415:lithium_downregulated
WBPaper00046446:rapid-synthesized_YoungAdult
WBPaper00046496:Rifampicin_downregulated
WBPaper00046795:starvation_downregulated
WBPaper00046805:P-granule-RNAi_downregulated_Set1
WBPaper00048530:fshr-1(ok778)_PA14_upregulated
WBPaper00048611:MnCl2_downregulated
WBPaper00048644:germline_enriched
WBPaper00048910:mRNA-interacting_protein
WBPaper00048988:neuron_expressed
WBPaper00049018:ham-3(RNAi)_upregulated
WBPaper00049018:swsn-2.2(RNAi)_upregulated
WBPaper00049159:Microwave_downregulated_L4
WBPaper00049266:NaAsO2-Stress_regulated_N2
WBPaper00049266:trx-1(ok1449)_regulated_unstressed
WBPaper00049368:daf-2(e1370)_downregulated
WBPaper00049498:npr-1(ur89)_regulated_3
WBPaper00049626:UNC-75_target
WBPaper00049732:blmp-1(tm548)_vs_N2_upregulated
WBPaper00049905:Age_variant_expression
WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050015:ifg-1(RNAi)_upregulated
WBPaper00050080:rbr-2(tm3141)_upregulated
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_24-cell-embryo
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050182:lmn-1(L535P)_downregulated
WBPaper00050412:cco-1(RNAi)_downregulated_met-2(ok2307)
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050522:mafr-1(tm6082)_downregulated
WBPaper00050636:aging_regulated_insoluble_protein
WBPaper00050698:DEP-1_interacting
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050859:upregulated_glh-1(gk100)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050928:male-mating_upregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:intestine_enriched
WBPaper00051305:vit-2(ac3)_downregulated
WBPaper00051461:pig-1(gm344)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053154:human-amyloid-beta_tau_regulated
WBPaper00053184:sma-2(rax5)_downregulated
WBPaper00053184:sma-4(rax3)_downregulated
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053402:cco-1(RNAi)_downregulated
WBPaper00053402:his-3(RNAi)_downregulated
WBPaper00053599:female_vs_male_downregulated
WBPaper00053713:Pheromone-induced_postdauer_vs_control_upregulated
WBPaper00053782:daf-2(RNAi)_oocyte_downregulated
WBPaper00053810:daf-2(e1370)_downregulated
WBPaper00054192:cold-shock_downregulated
WBPaper00054410:set-26(tm2467)_downregulated
WBPaper00054493:hpl-2(tm1489)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055060:flr-1(RNAi)_downregulated
WBPaper00055334:DLC-1_interacting
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055482:pmt-2(RNAi)_downregulated
WBPaper00055565:AVK_enriched
WBPaper00055626:pry-1(mu38)_upregulated
WBPaper00055941:atfs-1(et15)_downregulated
WBPaper00055971:nhl-2(ok818)_25C_upregulated
WBPaper00056034:pals-22(jy3)_downregulated
WBPaper00056034:pals-25(jy9)_downregulated
WBPaper00056039:ptl-1(ok621)_upregulated
WBPaper00056218:daf-16(mu86)_downregulated_Day7
WBPaper00056284:ints-1(RNAi)_upregulated
WBPaper00056290:hsp-6(mg585)_downregulated
WBPaper00056290:mdt-15(mg584)_downregulated
WBPaper00056330:glycine_upregulated
WBPaper00056443:DietaryRestriction_downregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
WBPaper00056550:ceh-60(ok1485)_downregulated_AdultDay1
WBPaper00056550:ceh-60(ok1485)_downregulated_AdultDay4
WBPaper00056586:kri-1(ok1251)_downregulated
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056868:P.aeruginosa_downregulated_smallRNA
WBPaper00056900:TOFU-6_interacting
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00057041:unc-70(cas983)_upregulated
WBPaper00057068:Cadmium_downregulated
WBPaper00057068:ints-4(RNAi)_downregulated
WBPaper00057068:ints-4(RNAi)_downregulated_Cadmium
WBPaper00057068:numr-1(RNAi)_upregulated
WBPaper00057068:numr-1(RNAi)_upregulated_Cadmium
WBPaper00057083:daf-2(e1370)rsks-1(ok1255)_post-transcriptional_downregulated
WBPaper00057288:Cold_downregulated_protein
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058665:graphene-oxide_downregulated_mRNA
WBPaper00058691:CFP-1_interacting_protein
WBPaper00058801:ceh-60(lst466)_downregulated_protein
WBPaper00058886:anp-1(ok608)_downregulated
WBPaper00058945:mir-1(gk276)_downregulated
WBPaper00058955:heatshock_upregulated_CE
WBPaper00059117:B.subtilis_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059328:mrps-5(RNAi)_upregulated_protein
WBPaper00059605:MUT-16_interacting
WBPaper00059609:malt-1_ilc-17.1_nfki-1_upregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059728:5ug_cholesterol_downregulated
WBPaper00059728:20ug_cholesterol_downregulated
WBPaper00059739:hira-1(gk835598)_downregulated_adult
WBPaper00059895:wounding_downregulated
WBPaper00060084:cco-1(RNAi)_downregulated_lin-40(yth27)
WBPaper00060084:DVE-1_interacting_protein_cco-1(RNAi)
WBPaper00060084:DVE-1_interacting_protein_control
WBPaper00060273:isp-1(qm150)_downregulated
WBPaper00060273:vrk-1(RNAi)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_downregulated_CoCl2_6hr
WBPaper00060445:ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_ikb-1(nr2027)_upregulated_L4
WBPaper00060445:nfki-1(cer1)_upregulated_L4
WBPaper00060458:rnf-5(tm794)_regulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00060683:hlh-11(ko1)_downregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060886:spr-5(by101);met-2(n4256)_downregulated
WBPaper00060886:spr-5(by101)_downregulated
WBPaper00060908:TEBP-1_interacting
WBPaper00060908:TEBP-2_interacting
WBPaper00060909:atfs-1(cmh15)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061007:X.citri_downregulated
WBPaper00061081:E.faecalis_downregulated_N2
WBPaper00061341:28C_48h_downregulated
WBPaper00061393:C.albicans_regulated
WBPaper00061424:Diet_MYb120_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061478:SUMO-conjugated_protein
WBPaper00061479:ubc-9(ne4833)_upregulated
WBPaper00061527:vit-2-vit-4_22519
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00061753:csr-1(tor159)_downregulated_25C
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062002:Day4-adult_secretome
WBPaper00062143:PQN-59_interacting
WBPaper00062193:hsf-1(RNAi)_upregulated
WBPaper00062293:isp-1(qm150)_downregulated
WBPaper00062347:blmp-1(tm548)_downregulated
WBPaper00062446:nhr-8(hd117)_downregulated
WBPaper00062456:doxycycline_downregulated_N2_protein
WBPaper00062498:PPM-1.D_interacting
WBPaper00062520:qui-1(db104)_upregulated
WBPaper00062534:fat-P-80_upregulated
WBPaper00062554:MAGU-2_interacting
WBPaper00062585:hlh-26(ok1453)_downregulated_E.faecium
WBPaper00062590:Aging_upregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00062672:let-418(n3536)dcp-66(RNAi)_downregulated
WBPaper00064005:starvation_downregulated_aptf-1(gk794)_protein
WBPaper00064005:starvation_upregulated_N2_protein
WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
WBPaper00064055:trl-1(cas1078)_upregulated_starved
WBPaper00064055:trl-1(cas10778)_upregulated_non-starved
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064107:lin-35(n745)_downregulated
WBPaper00064122:vulva_transcriptome
WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
WBPaper00064130:Beta-Amyloid_upregulated_protein
WBPaper00064201:SNA-1_interacting
WBPaper00064201:SNA-3_interacting
WBPaper00064494:postdauer_downregulated_AWA
WBPaper00064505:tamoxifen_upregulated
WBPaper00064532:pals-25(icb98)_upregulated
WBPaper00064565:dyf-1(mn335)_regulated_protein
WBPaper00064624:iHg-induced_aggregome
WBPaper00064632:daf-2(e1370)_downregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00064789:Day3_vs_Day1_upregulated_neuron
WBPaper00064789:Day6_vs_Day1_upregulated_neuron
WBPaper00064789:Day9_vs_Day1_upregulated_neuron
WBPaper00064789:Day12_vs_Day1_upregulated_neuron
WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
WBPaper00064933:E.coli-binding_secret_protein
WBPaper00064939:vit-5(RNAi)_downregulated
WBPaper00064952:Day5_vs_Day1_upregulated_25C
WBPaper00064952:Day5_vs_L4_upregulated_20C
WBPaper00064952:Day5_vs_L4_upregulated_25C
WBPaper00064952:Day10_vs_Day1_upregulated_20C
WBPaper00064952:Day10_vs_Day1_upregulated_25C
WBPaper00064952:Day10_vs_L4_upregulated_20C
WBPaper00064952:Day10_vs_L4_upregulated_25C
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065158:AFD_depleted
WBPaper00065392:Lb.gasseri_downregulated
WBPaper00065392:Lb.reuteri_downregulated
WBPaper00065392:Lb.rhamnosus_downregulated
WBPaper00065392:P.pentosaceus_downregulated
WBPaper00065623:28
WBPaper00065734:unc-25(e156)_downregulated
WBPaper00065749:Heat-Shock_upregulated_N2
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:3_0
WBPaper00065841:3_1
WBPaper00065841:3_2
WBPaper00065841:3_5
WBPaper00065975:P-body_vs_oocyte_depleted
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066085:hda-3(ok1991)_upregulated
WBPaper00066110:Doxorubicin_downregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_downregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066204:CdCl2_downregulated_mRNA
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4489_group_9
WBPaper00005124:estrogen_10-5M_regulated
WBPaper00005124:progesterone_10-7M_regulated
WBPaper00025099:MA_specific
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026952:class_B
WBPaper00026980:intestine_enriched
WBPaper00028564:CeMM_vs_NGM_downregulated
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_4
WBPaper00036130:mir-243_down_regulated
WBPaper00036286:Pattern_F
WBPaper00037113:CPF_16C_down-regulated
WBPaper00037113:CPF_DZN_16C_down-regulated
WBPaper00037113:DZN_16C_down-regulated
WBPaper00039835:ifg-1_upregulated
WBPaper00040184:hcf-1down_sir-2.1nc_daf-2nc
WBPaper00040210:Chlorpyrifos_24C_regulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00042548:miRISC_enriched
WBPaper00044091:Bpseudomallei_repressed_8h
WBPaper00044091:Bpseudomallei_repressed_12h
WBPaper00045015:nhr-25(RNAi)_downregulated
WBPaper00055899:2,4-Dinitroanisole_regulated
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5976]:class_2
[cgc6390]:herm_soma-enriched
Interaction (207)
Map_infoMapXPosition-10.358Error0.005327
PositivePositive_cloneC04F6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (60)
Remark (2)
MethodGene