WormBase Tree Display for Gene: WBGene00004862

WBGene00004862 Evidence: Paper_evidence: WBPaper00013343
  SMap: S_parent: Sequence: T05A10
  Identity: Version: 1
    Name: CGC_name: sma-9 Person_evidence: WBPerson261
      Sequence_name: T05A10.1
      Molecular_name (38)
      Other_name: CELE_T05A10.1 Accession_evidence: NDB BX284606
      Public_name: sma-9
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info (11)
  Disease_info (2)
  Models_disease_in_annotation: WBDOannot00000341
  Molecular_info: Corresponding_CDS (11)
    Corresponding_CDS_history (13)
    Corresponding_transcript (16)
    Other_sequence (328)
    Associated_feature (25)
    Gene_product_binds (41)
    Transcription_factor: WBTranscriptionFactor000847
  Experimental_info: RNAi_result (21)
    Expr_pattern: Expr2782
      Expr2783
      Expr3995
      Expr10436
      Expr1011744
      Expr1032413
      Expr1156052
      Expr1200018
      Expr2015897
      Expr2034130
    Drives_construct (15)
    Construct_product (11)
    Antibody: WBAntibody00000885
    Microarray_results (83)
    Expression_cluster: WBPaper00028867:HLH-1_induced_TF
      WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037055:DAF-16_binding_DNA
      WBPaper00037682:sma-2_sma-4_upregulated
      WBPaper00037946:EGL-5_interacting
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00040209:B.thuringiensis_upregulated_MY18
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040285:H2S_12hr_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044743:wdr-23_neuron_upregulated
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045316:prg-1_upregulated_L1
      WBPaper00045316:prg-1_upregulated_L2
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Oogenic
      WBPaper00045974:NSM_enriched_DSN-treated_RNAseq
      WBPaper00046497:B.thuringiensis_0.1mix_downregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_downregulated_12h
      WBPaper00046741:Garlic-Extract_upregulated_mRNA
      WBPaper00046805:csr-1(RNAi)_downregulated_Set1
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049217:DAF-16_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
      WBPaper00049920:Glucose-Diet_downregulated_hyl-2(tm2031)
      WBPaper00049942:HeatShock_downregulated_hsf-1(+)
      WBPaper00050015:ifg-1(RNAi)_upregulated
      WBPaper00050234:lin-28(RNAi)_upregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050488:20C_vs_25C_regulated_N2_adult
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00052884:emb-4(hc60)_downregulated
      WBPaper00053023:nlg-1(ok259)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(icb38)_upregulated
      WBPaper00053321:lin-15B(RNAi)_downregulated_starved-L1_Truseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_L1_SMARTseq
      WBPaper00053321:nos-1(gv5)nos-2(RNAi)_upregulated_starved-L1_Truseq
      WBPaper00053321:PGCs_depleted_NuGen
      WBPaper00053599:mitosis_vs_meiosis_downregulated
      WBPaper00053599:oocyte_vs_mitosis_downregulated
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055334:DLC-1_interacting
      WBPaper00055344:hypoxia_regulated_HIF-1_independent
      WBPaper00055482:pmt-2(RNAi)_upregulated
      WBPaper00055897:heat-shock_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00056868:P.aeruginosa_upregulated_smallRNA
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057288:iff-1(RNAi)_downregulated_transcript
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058691:WDR-5.1_interacting_protein
      WBPaper00058725:sftb-1(cer6)_downregulated
      WBPaper00058725:sftb-1(cer39)_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059356:BAZ-2_SET-6_interacting
      WBPaper00059471:EGL-43_interacting
      WBPaper00059567:olrn-1(ums9)_regulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:G2_and_W_blasts
      WBPaper00061439:unc-30(ok613)_downregulated
      WBPaper00061478:SUMO-conjugated_protein
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:chd-7_16664-jmjd-3.1
      WBPaper00061527:ldb-1_2877-scd-1_3086
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064055:trl-1(cas1077)_upregulated_non-starved
      WBPaper00064055:trl-1(cas1077)_upregulated_starved
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064122:vulva_transcriptome
      WBPaper00064156:lbp-3(overexpress)_upregulated
      WBPaper00064315:mes-3(bn199)_upregulated_EGCs
      WBPaper00064315:mes-4(bn73)_upregulated_EGCs
      WBPaper00064315:mrg-1(qa6200)_upregulated_PGCs
      WBPaper00064716:paraquat_downregulated
      WBPaper00064939:vit-5(RNAi)_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065199:Transgeneration-starvation_regulated_fed
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4386_cluster_6_5
      cgc4489_group_15
      cgc4489_group_20
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00025032:cluster_10
      WBPaper00025032:cluster_12
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00025141:unc-4::GFP_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00029437:dcr-1_upregulated
      WBPaper00031003:hlh_1_enriched
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00031832:slr-2_regulated
      WBPaper00032948:StarveUp2
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00037113:CPF_DZN_16C_up-regulated
      WBPaper00038060:SUMO-1_downregulated
      WBPaper00040823:alg-1(gk214)_downregulated
      WBPaper00040858:eQTL_age_regulated_aging
      WBPaper00040858:eQTL_age_regulated_developing
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_old
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00045865:biofilm_upregulated_A
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00057098:SiO2-nanoparticles_upregulated
      [cgc5767]:expression_class_E
      [cgc5767]:expression_class_E_pi(122_min)
      [cgc5767]:expression_class_SE
      [cgc5767]:expression_class_SE_pi(122_min)
      [cgc6390]:male_soma-enriched
    Interaction (82)
    WBProcess: WBbiopr:00000025
      WBbiopr:00000026
      WBbiopr:00000033
  Map_info: Map: X Position: 2.51785 Error: 0.028298
    Positive: Inside_rearr: nDf19
        yDp9
      Positive_clone: T05A10 Inferred_automatically: From sequence, transcript, pseudogene data
    Negative: Outside_rearr: mnDp1
        mnDf1
        yDp5
    Mapping_data: 2_point: 7096
        7097
        7099
      Pos_neg_data: 10243
        10244
        10245
        10246
        10247
  Reference: WBPaper00005858
    WBPaper00006346
    WBPaper00010219
    WBPaper00010293
    WBPaper00010554
    WBPaper00010631
    WBPaper00010697
    WBPaper00011094
    WBPaper00015525
    WBPaper00015590
    WBPaper00015628
    WBPaper00015659
    WBPaper00017861
    WBPaper00018518
    WBPaper00018836
    WBPaper00019779
    WBPaper00026119
    WBPaper00026121
    WBPaper00026309
    WBPaper00026419
    WBPaper00026632
    WBPaper00027295
    WBPaper00027307
    WBPaper00027702
    WBPaper00027832
    WBPaper00027858
    WBPaper00028189
    WBPaper00029226
    WBPaper00030661
    WBPaper00031852
    WBPaper00032891
    WBPaper00034463
    WBPaper00034625
    WBPaper00035006
    WBPaper00035079
    WBPaper00036106
    WBPaper00036372
    WBPaper00036394
    WBPaper00043609
    WBPaper00043875
    WBPaper00047209
    WBPaper00047578
    WBPaper00048971
    WBPaper00051630
    WBPaper00051748
    WBPaper00052654
    WBPaper00053184
    WBPaper00053366
    WBPaper00055090
    WBPaper00057753
    WBPaper00058580
    WBPaper00059222
    WBPaper00060096
    WBPaper00060493
    WBPaper00061718
    WBPaper00062426
    WBPaper00063299
    WBPaper00063926
    WBPaper00064212
    WBPaper00064315
    WBPaper00066003
  Picture: WBPicture0000013077
  Method: Gene