WormBase Tree Display for Gene: WBGene00011076

WBGene00011076 SMap: S_parent: Sequence: R07B1
  Identity: Version: 2
    Name: CGC_name: scav-5
      Sequence_name: R07B1.3
      Molecular_name: R07B1.3
        R07B1.3.1
        CE47857
      Other_name: CELE_R07B1.3 Accession_evidence: NDB BX284606
      Public_name: scav-5
    DB_info: Database: AceView gene XK479
        WormQTL gene WBGene00011076
        WormFlux gene WBGene00011076
        NDB locus_tag CELE_R07B1.3
        Panther gene CAEEL|WormBase=WBGene00011076|UniProtKB=Q09606
          family PTHR11923
        NCBI gene 181200
        RefSeq protein NM_077250.7
        SwissProt UniProtAcc Q09606
        UniProt_GCRP UniProtAcc Q09606
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:52 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 08 Mar 2010 11:14:55 WBPerson2970 Name_change: CGC_name: scav-5
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: scav
    Allele (49)
    Strain: WBStrain00032107
    RNASeq_FPKM (74)
    GO_annotation: 00055069
      00055070
      00055071
      00055072
      00055073
      00118366
    Ortholog: WBGene00063176 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00025076 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00164560 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00128499 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00096182 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00223420 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g3462 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP26.g958 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g16094 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g6033 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g19167 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g17440 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g20845 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g20062 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cni-scav-5 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g13614 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00072.g3359 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_01451 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_023470 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g06657 Oscheius tipulae From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g10864 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g1428 Panagrellus redivivus From_analysis: WormBase-Compara
      Pan_g17664 Panagrellus redivivus From_analysis: WormBase-Compara
      chrX_pilon.g19801 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00248702 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00278062 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00261379 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00293485 Trichuris muris From_analysis: WormBase-Compara
      FB:FBgn0035090 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      FB:FBgn0010435 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0035091 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0027562 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
            SonicParanoid
      FB:FBgn0260004 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-020419-29 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-031126-1 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      ZFIN:ZDB-GENE-170406-1 Danio rerio From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      HGNC:1664 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      MGI:1196458 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      MGI:893578 Mus musculus From_analysis: EnsEMBL-Compara
            OrthoFinder
            Panther
      RGD:2302 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
      RGD:621882 Rattus norvegicus From_analysis: EnsEMBL-Compara
            OMA
            OrthoFinder
            Panther
    Paralog: WBGene00008542 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00008692 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015389 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00013039 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00013578 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable scavenger receptor activity. Predicted to be involved in endocytosis. Predicted to be located in cytoplasm. Is an ortholog of human SCARB1 (scavenger receptor class B member 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: R07B1.3
    Corresponding_transcript: R07B1.3.1
    Other_sequence: CJC00424_1
    Associated_feature: WBsf648430
      WBsf663206
      WBsf1006555
      WBsf236205
      WBsf236206
  Experimental_info: RNAi_result: WBRNAi00017502 Inferred_automatically: RNAi_primary
      WBRNAi00078837 Inferred_automatically: RNAi_primary
      WBRNAi00051412 Inferred_automatically: RNAi_primary
      WBRNAi00034677 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1013043
      Expr1155102
      Expr2015618
      Expr2033853
    Drives_construct: WBCnstr00030950
    Construct_product: WBCnstr00030950
    Microarray_results (21)
    Expression_cluster: WBPaper00027339:daf-12(rh273)_downregulated
      WBPaper00032976:dosage_compensated_genes
      WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00035211:age-1_vs_age-1_downregulated
      WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:germline-precursors_blastula-embryo_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:intestine_larva_enriched
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00040412:germline-regulated_daf-16_target
      WBPaper00044030:nhr-8(hd117)_downregulated
      WBPaper00044316:CH3HgCl_2.0uM_upregulated
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00045390:ubc-9(RNAi)_upregulated
      WBPaper00045521:Gender_Neutral
      WBPaper00048988:neuron_expressed
      WBPaper00049368:daf-2(e1370)_downregulated
      WBPaper00049377:MWCNT_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00050015:ifg-1(RNAi)_downregulated
      WBPaper00050163:chd-3(eh4);let-418(RNAi)_downregulated_100-cell-embryo
      WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
      WBPaper00050332:skn-1(RNAi)_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00051039:ash-2(RNAi)_regulated_intestine
      WBPaper00051039:intestine_enriched
      WBPaper00053302:alovudine_72h_regulated
      WBPaper00053302:stavudine_72h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_downregulated
      WBPaper00053606:N2_vs_elt-2(ca15)_downregulated
      WBPaper00054872:egl-9(sa307)_upregulated
      WBPaper00055060:flr-1(RNAi)_upregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055354:Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rifampicin_downregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056034:pals-25(jy9)_upregulated
      WBPaper00056290:hsp-6(mg585)_upregulated
      WBPaper00056446:hsb-1(cg116)_downregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056550:ceh-60(ok1485)_upregulated_AdultDay4
      WBPaper00056617:adr-1_upregulated_embryo_transcript
      WBPaper00057041:spc-1(cas971)_upregulated
      WBPaper00057041:unc-70(cas983)_upregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00058955:heatshock_upregulated_CE
      WBPaper00059566:wdr-23(mac32)_upregulated
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059987:Wounding_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
      WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
      WBPaper00060661:sensory-neuron_depleted
      WBPaper00060871:M.humicola-extract_4h_regulated
      WBPaper00060909:atfs-1(cmh15)_downregulated
      WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
      WBPaper00061007:HB101_upregulated
      WBPaper00061007:S.aquatilis_upregulated
      WBPaper00061007:X.citri_upregulated
      WBPaper00061340:XXX
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061527:hpo-6-C49C3.9
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062184:PA14_upregulated
      WBPaper00062193:hsf-1(RNAi)_downregulated
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062305:P.brevicompactum_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062446:nhr-8(hd117)_downregulated
      WBPaper00062446:nhr-8(ok186)_downregulated
      WBPaper00062534:fat-P-80_downregulated
      WBPaper00062534:fat-P-80_downregulated_ech-6(RNAi)
      WBPaper00062590:Aging_downregulated_hypodermis
      WBPaper00062669:extracellular-vesicle_protein
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064229:B.thuringiensis-Cry5Ba_upregulated
      WBPaper00064403:Heat-killed-E.Coli_upregulated
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064933:bcf-1(ylf1)_downregulated_transcript
      WBPaper00065086:JU1400_N.ferruginous_regulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065258:anchor-cell_depleted
      WBPaper00065734:unc-25(e156)_upregulated
      WBPaper00065746:eat-2(ad1113)_upregulated
      WBPaper00065749:Heat-Shock_upregulated_N2
      WBPaper00065835:Day5_vs_Day1_downregulated
      WBPaper00065835:Day11_vs_Day1_downregulated
      WBPaper00065835:mtH2S-AP39-D0-treatment_downregulated_Day5
      WBPaper00065841:5_1
      WBPaper00065841:37_0
      WBPaper00065841:141_0
      WBPaper00065975:P-body_vs_oocyte_depleted
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00065995:M.humicola-extract_upregulated_N2
      WBPaper00065995:M.humicola-extract_upregulated_old-1(ok1273)
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
      WBPaper00066232:hsf-1(RNAi)_upregulated_WT
      cgc4489_group_3
      cgc4489_group_6
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00032062:age_regulated_genes
      WBPaper00035084:L2_enriched_AIN-2_IP
      WBPaper00035588:alg-1(-)_upregulated
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00035873:osmotically_regulated
      WBPaper00036123:Fluoranthene_regulated
      WBPaper00036130:mir-243_up_regulated
      WBPaper00036286:Pattern_C
      WBPaper00038231:Cry5B_1.5-fold_downregulated
      WBPaper00038231:Cry5B_2-fold_downregulated
      WBPaper00038304:octr-1_regulated
      WBPaper00040116:pRJ-FR.5_down_regulated
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
      WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
      WBPaper00040858:eQTL_regulated_developing
      WBPaper00040858:eQTL_regulated_juvenile
      WBPaper00040858:eQTL_regulated_reproductive
      WBPaper00040876:mir-35_downregulated
      WBPaper00040963:TA300_up
      WBPaper00040985:AIN-2_asynchronous_intestine
      WBPaper00041002:HF_3d_0.2mM_Up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041002:HQ_3d_0.2mM_Up
      WBPaper00041002:HQ_3d_2.0mM_Up
      WBPaper00041207:CE_dauer_down
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_24h
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_downregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:eat-2(ad465)_rapamycin_upregulated
      WBPaper00053236:daf-16(mgDF50)_regulated_Starved
      WBPaper00053236:Starvation_regulated_N2
      WBPaper00056330:mrps-5(RNAi)_upregulated
      [cgc6390]:Cluster_C
    Interaction (22)
  Map_info: Map: X Position: 1.72968 Error: 0.000308
    Positive: Positive_clone: R07B1 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00010266
    WBPaper00018248
    WBPaper00018249
    WBPaper00038491
    WBPaper00055090
    WBPaper00061821
    WBPaper00065146
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene