WormBase Tree Display for Gene: WBGene00004926

WBGene00004926 Evidence: Person_evidence: WBPerson508
  SMap: S_parent: Sequence: C08G5
  Identity: Version: 1
    Name: CGC_name: snt-6 Person_evidence: WBPerson508
      Sequence_name: C08G5.4
      Molecular_name: C08G5.4a
        C08G5.4a.1
        CE34672
        C08G5.4b
        CE46215
        C08G5.4c
        CE51225
        C08G5.4b.1
        C08G5.4c.1
      Other_name: CELE_C08G5.4 Accession_evidence: NDB BX284602
      Public_name: snt-6
    DB_info: Database: AceView gene 2B30
        WormQTL gene WBGene00004926
        WormFlux gene WBGene00004926
        NDB locus_tag CELE_C08G5.4
        Panther gene CAEEL|WormBase=WBGene00004926|UniProtKB=G4RXP2
          family PTHR10024
        NCBI gene 182427
        RefSeq protein NM_001267093.2
            NM_001318279.3
            NM_001267094.2
        TrEMBL UniProtAcc Q9TZL3
            G4RXP2
            A0A0S4XQZ9
        UniProt_GCRP UniProtAcc G4RXP2
    Species: Caenorhabditis elegans
    History: Version_change: 1 07 Apr 2004 11:29:36 WBPerson1971 Event: Imported: Initial conversion from geneace
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snt
    Allele (115)
    Strain: WBStrain00033195
    RNASeq_FPKM (74)
    GO_annotation (17)
    Ortholog (49)
    Paralog: WBGene00004921 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004922 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004923 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004924 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004925 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00011682 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00004316 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006306 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020861 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable several functions, including SNARE binding activity; calcium ion binding activity; and phospholipid binding activity. Predicted to be involved in cellular response to calcium ion; regulation of secretion by cell; and vesicle-mediated transport. Predicted to be located in several cellular components, including axon; exocytic vesicle; and synapse. Is an ortholog of human SYT7 (synaptotagmin 7). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS (3)
    Corresponding_CDS_history: C08G5.4:wp104
    Corresponding_transcript: C08G5.4a.1
      C08G5.4b.1
      C08G5.4c.1
    Other_sequence (28)
    Associated_feature: WBsf986476
      WBsf986477
      WBsf1011430
      WBsf1011431
      WBsf222625
  Experimental_info: RNAi_result: WBRNAi00010486 Inferred_automatically: RNAi_primary
      WBRNAi00028696 Inferred_automatically: RNAi_primary
      WBRNAi00112399 Inferred_automatically: RNAi_primary
      WBRNAi00040137 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1012041
      Expr1032454
      Expr1144211
      Expr2015981
      Expr2034216
    Microarray_results (19)
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00036375:enriched_in_PVD_OLL
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_larva_enriched
      WBPaper00037950:all-neurons_larva_SelectivelyEnriched
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:dopaminergic-neurons_larva_enriched
      WBPaper00037950:dopaminergic-neurons_larva_SelectivelyEnriched
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_larva_enriched
      WBPaper00037950:PVD-OLL-neurons_larva_SelectivelyEnriched
      WBPaper00038438:Harposporium_24hr_downregulated_RNAseq
      WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
      WBPaper00040420:ALM_PLM_enriched
      WBPaper00040420:FLP_enriched
      WBPaper00044426:rotenone_24h_upregulated
      WBPaper00044656:tatn-1(qd182)_upregulated
      WBPaper00044736:flat_dev_expression
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045417:128Q-huntingtin_downreglated
      WBPaper00045521:Gender_Neutral
      WBPaper00045861:set-2(ok952)_upregulated
      WBPaper00045861:wdr-5(ok1417)_upregulated
      WBPaper00045974:NSM_enriched_totalRNA_RNAseq
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046805:csr-1(RNAi)_upregulated_Set1
      WBPaper00046805:csr-1(RNAi)_upregulated_Set2
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_enriched
      WBPaper00048988:neuron_expressed
      WBPaper00049001:EVN_enriched
      WBPaper00050344:AFD-neuron_enriched
      WBPaper00050344:ASER-neuron_enriched
      WBPaper00050344:PLM-neuron_enriched
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_adult_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00050726:starvation_regulated_LowSalt
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053810:daf-2(e1370)_upregulated
      WBPaper00053810:nuo-6(qm200)_upregulated
      WBPaper00055060:flr-1(RNAi)_downregulated
      WBPaper00055103:thoc-5(wy822)_upregulated
      WBPaper00055354:Allantoin_upregulated
      WBPaper00055354:Psora-Allantoin_downregulated
      WBPaper00055354:Psora_upregulated
      WBPaper00055354:Rapamycin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Metformin_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Psora_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin_downregulated
      WBPaper00055648:male-tail_expressed
      WBPaper00055827:daf-2(e1370)_downregulated
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056090:E.faecalis_upregulated_N2
      WBPaper00056139:soil-microbiota_upregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056443:sek-1(km4)_upregulated
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:hmc_biased
      WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
      WBPaper00057068:numr-1(RNAi)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00058691:set-2(bn129)_upregulated
      WBPaper00058711:wdr-5(ok1417)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059027:neuron-synapses_depleted
      WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
      WBPaper00059471:EGL-43_interacting
      WBPaper00059609:malt-1_ilc-17.1_nfki-1_downregulated
      WBPaper00059664:srbc-48(ac23)_upregulated
      WBPaper00059754:E.faecalis_OG1RF_upregulated
      WBPaper00060273:isp-1(qm150)_upregulated
      WBPaper00060459:bcat-1(RNAi)_upregulated
      WBPaper00060661:sensory-neuron_enriched
      WBPaper00060811:L1_vs_adult_upregulated_neural
      WBPaper00061081:E.faecalis_upregulated_N2
      WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061340:ADL
      WBPaper00061340:AWA
      WBPaper00061341:28C_24h_upregulated
      WBPaper00061341:28C_48h_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated
      WBPaper00061439:unc-30(ok613)_upregulated_P.aeruginosa-infection
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:mep-1(ne4629)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:xbx-3-DH11.5_20397
      WBPaper00061651:ADA_enriched
      WBPaper00061651:ALM_enriched
      WBPaper00061651:AVM_enriched
      WBPaper00061651:FLP_enriched
      WBPaper00061651:PLM_enriched
      WBPaper00061651:PVD_enriched
      WBPaper00061651:PVM_enriched
      WBPaper00061651:RIB_enriched
      WBPaper00061651:URB_enriched
      WBPaper00061651:URX_enriched
      WBPaper00061902:camt-1(ok515)_regulated_AFD
      WBPaper00061902:camt-1(ok515)_regulated_RMG
      WBPaper00061995:mter-4(syb3662syb3403)_downregulated
      WBPaper00062103:neuron_enriched
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
      WBPaper00064130:Beta-Amyloid_24h_downregulated_mRNA
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064721:fasn-1(g14)_downregulated_starved
      WBPaper00064992:Capsaicin_upregulated
      WBPaper00064992:Eugenol_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065158:AFD_enriched
      WBPaper00065623:67
      WBPaper00065841:20_0
      WBPaper00065841:20_1
      WBPaper00065841:20_2
      WBPaper00065841:35_0
      WBPaper00065841:39_0
      WBPaper00065841:39_1
      WBPaper00065841:54_0
      WBPaper00065841:68_1
      WBPaper00065841:70_0
      WBPaper00065841:70_1
      WBPaper00065841:90_0
      WBPaper00065841:93_0
      WBPaper00065841:105_0
      WBPaper00065841:107_0
      WBPaper00065841:121_0
      WBPaper00065841:140_0
      WBPaper00065841:145_0
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066085:sin-3(tm1276)_downregulated
      cgc4489_group_18
      WBPaper00024671:AFD_AWB_vs_unsorted_upregulated
      WBPaper00024671:AFD_vs_AWB_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00030839:Embryo_Pan_Neuronal
      WBPaper00030839:Larval_Pan_Neuronal
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031532:Larva_Pan_Neuronal_Enriched
      WBPaper00032948:StarveUp3
      WBPaper00034661:AgNPs_downregulated
      WBPaper00035227:heat_shock_regulated
      WBPaper00036286:Pattern_D
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00041174:environmental
      WBPaper00041174:environmental_prime
      WBPaper00041939:control_vs_EtBr-exposed_24h
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_24h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_downregulated_in-DMSO
      WBPaper00048989:N2_allantoin_downregulated
    Interaction: WBInteraction000156876
      WBInteraction000206543
      WBInteraction000208347
      WBInteraction000208673
      WBInteraction000216127
      WBInteraction000216602
      WBInteraction000220918
      WBInteraction000225044
      WBInteraction000232924
      WBInteraction000235824
      WBInteraction000242015
      WBInteraction000253436
      WBInteraction000260820
      WBInteraction000261491
      WBInteraction000271861
      WBInteraction000278208
      WBInteraction000283473
      WBInteraction000287369
      WBInteraction000290412
      WBInteraction000296086
      WBInteraction000303966
      WBInteraction000307030
      WBInteraction000307258
      WBInteraction000308355
      WBInteraction000309582
      WBInteraction000316488
      WBInteraction000318551
      WBInteraction000323049
      WBInteraction000328189
      WBInteraction000330001
      WBInteraction000338298
      WBInteraction000349406
      WBInteraction000350166
      WBInteraction000353442
      WBInteraction000358994
      WBInteraction000363630
      WBInteraction000372663
      WBInteraction000374482
      WBInteraction000377917
      WBInteraction000382324
      WBInteraction000386357
      WBInteraction000392408
      WBInteraction000401507
      WBInteraction000414404
      WBInteraction000416517
      WBInteraction000430113
      WBInteraction000431723
      WBInteraction000432901
      WBInteraction000453147
      WBInteraction000459750
      WBInteraction000462669
  Map_info: Map: II Position: -15.591 Error: 9e-05
    Positive: Positive_clone: C08G5 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene