WormBase Tree Display for Gene: WBGene00013144

WBGene00013144 SMap: S_parent: Sequence: Y53C12B
  Identity: Version: 2
    Name: CGC_name: pno-1 Person_evidence: WBPerson260
      Sequence_name: Y53C12B.2
      Molecular_name: Y53C12B.2
        Y53C12B.2.1
        CE14896
      Other_name: CELE_Y53C12B.2 Accession_evidence: NDB BX284602
      Public_name: pno-1
    DB_info: Database: AceView gene 2K30
        WormQTL gene WBGene00013144
        WormFlux gene WBGene00013144
        NDB locus_tag CELE_Y53C12B.2
        Panther gene CAEEL|WormBase=WBGene00013144|UniProtKB=O18216
          family PTHR12826
        NCBI gene 174534
        RefSeq protein NM_063698.5
        SwissProt UniProtAcc O18216
        TREEFAM TREEFAM_ID TF300114
        UniProt_GCRP UniProtAcc O18216
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Nov 2017 15:54:28 WBPerson1983 Name_change: CGC_name: pno-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: pno
    Allele: WBVar01499702
      WBVar00105398
      WBVar01720483
      WBVar01498435
      WBVar01413786
      WBVar01413787
      WBVar01413789
      WBVar01499017
      WBVar01989269
      WBVar02123973
      WBVar01253206
      WBVar02109808
      WBVar01309950
      WBVar01309952
      WBVar01309953
      WBVar01499234
      WBVar01309954
      WBVar01309955
      WBVar01309956
      WBVar01309957
      WBVar01309958
      WBVar00247539
      WBVar01309959
      WBVar01696204
      WBVar02156420
      WBVar01405503
      WBVar01405504
      WBVar00174777
      WBVar00174778
      WBVar00374700
      WBVar01943416
      WBVar00374701
      WBVar01627049
      WBVar00374702
      WBVar01627050
      WBVar00374703
      WBVar00374704
      WBVar00374705
      WBVar00758183
      WBVar00758184
      WBVar00758185
      WBVar00758186
      WBVar00758187
      WBVar00758188
      WBVar01666562
      WBVar00758189
      WBVar00758190
      WBVar00758191
      WBVar00758192
      WBVar00758193
      WBVar00758194
      WBVar00758195
      WBVar00758196
      WBVar00758197
      WBVar00758198
      WBVar01498940
      WBVar00758199
      WBVar01642053
      WBVar01400274
      WBVar01243441
      WBVar01400275
    Strain: WBStrain00051193
      WBStrain00051907
    RNASeq_FPKM (74)
    GO_annotation: 00031718
      00031719
      00031720
      00031721
      00031722
      00031723
      00031724
      00120072
      00120073
    Contained_in_operon: CEOP2452
    Ortholog: WBGene00024334 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            WormBase-Compara
      WBGene00067251 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00134822 Caenorhabditis japonica From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00144829 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            WormBase-Compara
      WBGene00234298 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g12693 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g12489 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g13315 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g14723 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g9019 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g14995 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g4981 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1915 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g10278 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g6975 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g18354 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00411.g10492 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-Y53C12B.2 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g8902 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      FL83_08498 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_003638 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g02269 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g9565 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_20184510 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrII_pilon.g5581 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246764 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00114813 Pristionchus pacificus From_analysis: WormBase-Compara
      WBGene00256107 Strongyloides ratti From_analysis: WormBase-Compara
      WBGene00289075 Trichuris muris From_analysis: WormBase-Compara
      SGD:S000005671 Saccharomyces cerevisiae From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      FB:FBgn0027334 Drosophila melanogaster From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-040426-1419 Danio rerio From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      HGNC:32790 Homo sapiens From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:1913499 Mus musculus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      RGD:727882 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Hieranoid
            Inparanoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
    Structured_description: Automated_description: Predicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PNO1 (partner of NOB1 homolog). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y53C12B.2
    Corresponding_transcript: Y53C12B.2.1
    Other_sequence (80)
    Associated_feature: WBsf665965
      WBsf665966
      WBsf665967
      WBsf989133
      WBsf1012894
      WBsf223699
      WBsf223700
      WBsf223701
  Experimental_info: RNAi_result: WBRNAi00076812 Inferred_automatically: RNAi_primary
      WBRNAi00057256 Inferred_automatically: RNAi_primary
      WBRNAi00075896 Inferred_automatically: RNAi_primary
      WBRNAi00009378 Inferred_automatically: RNAi_primary
      WBRNAi00037405 Inferred_automatically: RNAi_primary
      WBRNAi00106944 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027618
      Expr1035835
      Expr1160693
      Expr2007837
      Expr2026077
    Drives_construct: WBCnstr00029745
    Construct_product: WBCnstr00029745
    Microarray_results (15)
    Expression_cluster: WBPaper00028451:Low_abundance_spermatogenesis_enriched
      WBPaper00032528:L3_enriched
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L2-larva_expressed
      WBPaper00037950:bodywall-muscle_larva_enriched
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
      WBPaper00037950:excretory-cell_L2-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L3-L4-larva_expressed
      WBPaper00037950:hypodermis_larva_enriched
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
      WBPaper00040221:DAF-12_target_ALF4
      WBPaper00040412:germline-regulated_daf-12_target
      WBPaper00044736:flat_dev_expression
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045521:Gender_Neutral
      WBPaper00045774:clk-1_upregulated
      WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
      WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
      WBPaper00048910:mRNA-interacting_protein
      WBPaper00048923:Aging_regulated
      WBPaper00048988:neuron_expressed
      WBPaper00049545:cco-1(RNAi)_downregulated
      WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
      WBPaper00050468:hlh-30-dependent_Cry5B_regulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
      WBPaper00050990:arcade_intestinal-valve_expressed
      WBPaper00050990:body-muscle_expressed
      WBPaper00050990:GABAergic-neuron_expressed
      WBPaper00050990:hypodermis_expressed
      WBPaper00050990:intestine_expressed
      WBPaper00050990:NMDA-neuron_expressed
      WBPaper00050990:pharynx_expressed
      WBPaper00050990:seam_expressed
      WBPaper00051039:germline_enriched
      WBPaper00051245:epidermis_cytoplasm_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053184:sma-2(rax5)_upregulated
      WBPaper00053184:sma-4(rax3)_upregulated
      WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
      WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
      WBPaper00053388:dauer_regulated_Cluster2
      WBPaper00053599:oocyte_vs_mitosis_upregulated
      WBPaper00055049:S.gordonii_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055648:germline_expressed
      WBPaper00055971:nhl-2(ok818)_25C_downregulated
      WBPaper00056471:S.aureus-4h_upregulated_N2
      WBPaper00056826:SGP_biased
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00058691:sin-3(tm1276)_downregulated
      WBPaper00059254:CSR-1_interacting
      WBPaper00060014:set-2(zr2012)_upregulated
      WBPaper00060278:atp-2(RNAi)_upregulated
      WBPaper00061274:hypergravity_15xg_downregulated
      WBPaper00061479:HDA-1_interacting_protein
      WBPaper00061527:F53F4.11_10656-F44G4.1
      WBPaper00062193:skn-1(RNAi)_upregulated
      WBPaper00062293:isp-1(qm150)_downregulated
      WBPaper00062325:etr-1(lq61)_downregulated
      WBPaper00062498:PPM-1.D_interacting
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00063930:BRD-1_interacting
      WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064071:NHR-49_interacting
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
      WBPaper00064716:paraquat_upregulated
      WBPaper00065120:body-muscle-transcriptome
      WBPaper00065373:Cisplatin_downregulated_WT
      WBPaper00065373:sek-1(km4)_downregulated_cisplatin
      WBPaper00065373:sek-1(km4)_downregulated_Ref
      WBPaper00065841:11_0
      WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
      WBPaper00024393:strongly_regulated_dauer_genes
      WBPaper00025032:cluster_13
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026980:intestine_enriched
      WBPaper00031003:24hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00032948:StarveUp3
      WBPaper00035227:heat_shock_regulated
      WBPaper00036429:glp-1(oz112)_upregulated
      WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
      WBPaper00047070:DAF-16-dependent_UV_response
      WBPaper00047070:N2_starvation_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00050538:Fasting_upregulated
      WBPaper00053236:Starvation_regulated_N2
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction (194)
  Map_info: Map: II Position: 1.70646
    Positive: Positive_clone: Y53C12B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (4)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene