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WormBase Tree Display for Gene: WBGene00007919

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Name Class

WBGene00007919SMapS_parentSequenceC34C6
IdentityVersion2
NameCGC_namecup-16Paper_evidenceWBPaper00050677
Person_evidenceWBPerson170
Sequence_nameC34C6.7
Molecular_nameC34C6.7a
C34C6.7a.1
CE43435
C34C6.7b
CE43411
C34C6.7b.1
Other_nameCELE_C34C6.7Accession_evidenceNDBBX284602
Public_namecup-16
DB_infoDatabaseAceViewgene2I997
WormQTLgeneWBGene00007919
WormFluxgeneWBGene00007919
NDBlocus_tagCELE_C34C6.7
NCBIgene174393
RefSeqproteinNM_001267252.2
NM_001267253.3
TrEMBLUniProtAccB7WN89
B7WN88
UniProt_GCRPUniProtAccB7WN88
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:48WBPerson1971EventImportedInitial conversion from CDS class of WS125
217 Feb 2017 10:41:21WBPerson2970Name_changeCGC_namecup-16
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcup
AlleleWBVar01499702
WBVar01498435
WBVar01695950
WBVar01499917
WBVar01626964
WBVar00751827
WBVar00751828
WBVar00751829
WBVar00751830
WBVar00751831
WBVar00751832
WBVar00751833
WBVar00751834
WBVar00751835
WBVar00751836
WBVar01252151
WBVar00751837
WBVar00751838
WBVar00751839
WBVar00174125
WBVar01499423
WBVar00174126
WBVar02147491
WBVar01308752
WBVar01935121
WBVar01604357
WBVar01498940
WBVar00104697
WBVar00104698
RNASeq_FPKM (74)
GO_annotation00006496
00006497
00006498
00006499
00006500
Ortholog (17)
Structured_descriptionAutomated_descriptionInvolved in endocytosis and lysosomal protein catabolic process. Predicted to be located in lysosome.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC34C6.7a
C34C6.7b
Corresponding_CDS_historyC34C6.7:wp198
Corresponding_transcriptC34C6.7a.1
C34C6.7b.1
Associated_featureWBsf657989
WBsf988799
WBsf221805
Experimental_infoRNAi_resultWBRNAi00041856Inferred_automaticallyRNAi_primary
WBRNAi00011583Inferred_automaticallyRNAi_primary
Expr_patternExpr1022610
Expr1033433
Expr1145874
Expr2010594
Expr2028834
Drives_constructWBCnstr00033382
Construct_productWBCnstr00033382
Microarray_results (16)
Expression_clusterWBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00036375:enriched_in_PVD_OLL
WBPaper00037682:sma-2_sma-4_upregulated
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040990:PA14_upregulated
WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044030:nhr-8(hd117)_upregulated
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_5day_downregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:flat_dev_expression
WBPaper00044743:wdr-23_neuron_upregulated
WBPaper00045314:S.aureus-induced_N2
WBPaper00045390:tunicamycin_downregulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045417:128Q-huntingtin_upreglated
WBPaper00045521:Spermatogenic
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_6h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048690:gonad-male-biased
WBPaper00048988:neuron_expressed
WBPaper00049018:ham-3(RNAi)_downregulated
WBPaper00049266:NaAsO2-Stress_regulated_N2
WBPaper00049266:NaAsO2-Stress_regulated_trx-1(ok1449)
WBPaper00049495:starvation-refeeding_regulated
WBPaper00049498:npr-1(ur89)_regulated_1
WBPaper00049545:jmjd-3.1(+)_upregulated
WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_upregulated
WBPaper00049635:dop-1(vs100)_upregulated
WBPaper00049732:blmp-1(tm548)_vs_N2_upregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049942:hsf-1(RNAi)_upregulated
WBPaper00050163:chd-3(eh4)_downregulated_100-cell-embryo
WBPaper00050332:skn-1(RNAi)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day1-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050859:upregulated_pgl-1(ct131)_vs_control_day1-adult
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00051257:Levamisole_upregulated
WBPaper00051305:vit-2(ac3)_upregulated
WBPaper00051540:exc-7(csb29);mbl-1(csb30)_upregulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053295:lin-22(icb38)_upregulated
WBPaper00053295:lin-22(ot269)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
WBPaper00053318:Aging_upregulated_mRNA_N2
WBPaper00053318:mir-71(n4115)_upregulated_mRNA
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053402:his-3(RNAi)_upregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00053771:up_at_24h-NaCl
WBPaper00053798:nhr-49(nr2041)_tBOOH_upregulated
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Psora_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00055941:nuo-6(qm200);atfs-1(gk3094)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056090:E.faecalis_upregulated_N2
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056165:mina-1(ok1521)_downregulated_transcript
WBPaper00056167:ifo-1(kc2)_downregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056218:daf-16(mu86)_upregulated_Day7
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056326:zip-3(gk3164)_upregulated_P.aeruginosa-infected
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056997:nmad-1(ok3133)_upregulated_germline_25C
WBPaper00057068:Cadmium_upregulated
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00057196:raga-1(ok386)_upregulated)
WBPaper00057288:Cold_upregulated_transcript
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_upregulated
WBPaper00058598:spn-4(tm291)_upregulated
WBPaper00058711:paraquat_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_downregulated_lpin-1(RNAi)
WBPaper00059754:C.neoformans_H99_upregulated
WBPaper00059754:E.faecalis_OG1RF_upregulated
WBPaper00059824:rnp-6(dh1127)_regulated_OP50
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060273:isp-1(qm150)_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
WBPaper00060434:pH4.33_vs_pH6.33_uprgulated
WBPaper00060634:fhod-1(tm2363)_upregulated
WBPaper00060683:hlh-11(ko1)_upregulated
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060911:prx-5(RNAi)_upregulated_mRNA
WBPaper00061081:E.faecalis_upregulated_N2
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061340:M_cell
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_upregulated
WBPaper00061527:C32F10.4-D1086.2
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062095:unc-4(e120)_upregulated_VA-neuron
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062325:muscle_enriched_coding-RNA
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062354:H.zoospora_12h_regulated
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062440:crh-1(syb385)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00062590:Aging_upregulated_intestine
WBPaper00062590:Aging_upregulated_neuron
WBPaper00062684:pathogen_upregulated_N2
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064156:lipl-4(overexpress)_upregulated
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064716:paraquat_downregulated
WBPaper00064871:hypoxia_downregulated_F3
WBPaper00064871:PA14_upregulated_AWA
WBPaper00064939:vit-5(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065074:glna(-)_upregulated
WBPaper00065086:JU1400_N.ausubeli_regulated
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:N2_N.ausubeli_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065199:Transgeneration-starvation_regulated_fed
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065835:Day11_vs_Day1_upregulated
WBPaper00065841:4_0
WBPaper00065841:4_1
WBPaper00065841:7_1
WBPaper00065841:7_2
WBPaper00065841:18_0
WBPaper00065841:31_0
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065984:pals-17(syb3980)_upregulated
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066038:mip-1(how5)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
cgc4489_group_9
WBPaper00005475:Aging-regulated
WBPaper00024671:AFD_AWB_vs_unsorted_downregulated
WBPaper00025141:N2_Expressed_Genes
WBPaper00026952:class_B
WBPaper00028789:PA14_vs_gacA_upregulated_4hr
WBPaper00028789:PA14_vs_gacA_upregulated_8hr
WBPaper00028789:PA14_vs_OP50_upregulated_4hr
WBPaper00028789:PA14_vs_OP50_upregulated_8hr
WBPaper00029437:dcr-1_upregulated
WBPaper00031003:0hr_muscle_enriched
WBPaper00031003:total_muscle_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00032062:age_regulated_genes
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:StarveUp3
WBPaper00034757:up_by_oxidative_stress
WBPaper00035227:heat_shock_regulated
WBPaper00036123:Cadmium_regulated
WBPaper00036286:Pattern_B
WBPaper00036464:S.aureus-RN6390_regulated
WBPaper00038060:SUMO-1_downregulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00038231:Cry5B_2-fold_upregulated
WBPaper00039851:Live_C_albicans_vs_HK_OP50
WBPaper00039866:ClassComp_daf-19_downregulated
WBPaper00039866:SAM_daf-19_downregulated
WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.2
WBPaper00040603:tdp-1(lf)_up_vs_N2_FC_1.5
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00041002:HF_3d_0.2mM_Up
WBPaper00041002:HF_3d_2.0mM_Up
WBPaper00041002:HQ_3d_2.0mM_Up
WBPaper00041207:CE_dauer_up
WBPaper00041370:spg-7(RNAi)_upregulated
WBPaper00041606:CE_B.thuringiensis-DB27_regulated
WBPaper00041606:CE_S.marcescens_regulated
WBPaper00041606:CE_X.nematophila_regulated
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_3h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041960:kgb-1_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044013:nasp-1_downregulated
WBPaper00045015:nhr-25(RNAi)_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048567:dnj-14_upregulated
WBPaper00048624:hlh-25(ok1710)_downregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00048989:N2_allantoin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00050767:Octopamine_induced
WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
WBPaper00057098:SiO2-nanoparticles_upregulated
[cgc5376]:let-60(G12V)-regulated_genes
[cgc5976]:class_1
[cgc6390]:mixed_spermatogenesis-somatic
InteractionWBInteraction000032016
WBInteraction000105963
WBInteraction000109107
WBInteraction000117548
WBInteraction000118188
WBInteraction000119684
WBInteraction000120385
WBInteraction000121709
WBInteraction000125314
WBInteraction000126888
WBInteraction000127546
WBInteraction000137804
WBInteraction000141008
WBInteraction000142385
WBInteraction000143597
WBInteraction000147723
WBInteraction000148112
WBInteraction000149299
WBInteraction000149672
WBInteraction000149740
WBInteraction000149799
WBInteraction000156837
WBInteraction000164995
WBInteraction000168719
WBInteraction000170420
WBInteraction000170647
WBInteraction000171652
WBInteraction000171966
WBInteraction000172588
WBInteraction000175184
WBInteraction000176695
WBInteraction000176841
WBInteraction000178667
WBInteraction000183798
WBInteraction000183899
WBInteraction000184420
WBInteraction000185011
WBInteraction000188978
WBInteraction000190181
WBInteraction000190588
WBInteraction000199454
WBInteraction000199816
WBInteraction000201988
WBInteraction000203239
WBInteraction000206459
WBInteraction000206970
WBInteraction000207008
WBInteraction000208911
WBInteraction000209144
WBInteraction000209407
WBInteraction000210649
WBInteraction000213402
WBInteraction000213978
WBInteraction000215986
WBInteraction000216266
WBInteraction000216562
WBInteraction000217097
WBInteraction000219287
WBInteraction000219378
WBInteraction000222717
WBInteraction000223667
WBInteraction000223906
WBInteraction000224954
WBInteraction000225616
WBInteraction000226730
WBInteraction000229965
WBInteraction000231234
WBInteraction000232402
WBInteraction000233763
WBInteraction000234448
WBInteraction000238941
WBInteraction000239155
WBInteraction000239493
WBInteraction000239534
WBInteraction000240801
WBInteraction000243072
WBInteraction000244983
WBInteraction000246239
WBInteraction000246801
WBInteraction000250139
WBInteraction000251871
WBInteraction000254507
WBInteraction000254678
WBInteraction000256799
WBInteraction000259148
WBInteraction000263622
WBInteraction000263793
WBInteraction000267082
WBInteraction000269494
WBInteraction000269887
WBInteraction000273070
WBInteraction000277477
WBInteraction000279413
WBInteraction000280358
WBInteraction000280394
WBInteraction000289037
WBInteraction000301258
WBInteraction000303082
WBInteraction000307384
WBInteraction000307685
WBInteraction000308586
WBInteraction000312410
WBInteraction000316593
WBInteraction000319629
WBInteraction000330694
WBInteraction000331589
WBInteraction000331897
WBInteraction000335161
WBInteraction000338713
WBInteraction000339233
WBInteraction000341688
WBInteraction000342585
WBInteraction000344470
WBInteraction000345431
WBInteraction000345884
WBInteraction000346078
WBInteraction000348703
WBInteraction000349707
WBInteraction000350354
WBInteraction000352150
WBInteraction000352520
WBInteraction000356819
WBInteraction000356908
WBInteraction000358794
WBInteraction000359739
WBInteraction000360941
WBInteraction000361902
WBInteraction000363093
WBInteraction000363785
WBInteraction000363885
WBInteraction000366380
WBInteraction000367008
WBInteraction000369343
WBInteraction000370017
WBInteraction000377132
WBInteraction000379318
WBInteraction000379385
WBInteraction000391495
WBInteraction000392236
WBInteraction000394679
WBInteraction000398190
WBInteraction000398841
WBInteraction000402192
WBInteraction000403869
WBInteraction000404628
WBInteraction000409530
WBInteraction000409742
WBInteraction000412072
WBInteraction000414986
WBInteraction000416814
WBInteraction000417340
WBInteraction000419295
WBInteraction000420846
WBInteraction000421511
WBInteraction000421882
WBInteraction000422302
WBInteraction000422912
WBInteraction000424794
WBInteraction000424984
WBInteraction000430112
WBInteraction000432731
WBInteraction000438585
WBInteraction000443809
WBInteraction000443815
WBInteraction000446352
WBInteraction000449671
WBInteraction000451286
WBInteraction000456344
WBInteraction000457730
WBInteraction000461711
Map_infoMapIIPosition0.85112
PositivePositive_cloneC34C6Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00050677
WBPaper00062388
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene