WormBase Tree Display for Gene: WBGene00022496

WBGene00022496 SMap: S_parent: Sequence: Y119D3B
  Identity: Version: 3
    Name: CGC_name: fbxa-92 Person_evidence: WBPerson655
      Sequence_name: Y119D3B.20
      Molecular_name: Y119D3B.20
      Other_name: CELE_Y119D3B.20 Accession_evidence: NDB BX284603
      Public_name: fbxa-92
    DB_info: Database: AceView gene 3C348
        WormQTL gene WBGene00022496
        WormFlux gene WBGene00022496
        NDB locus_tag CELE_Y119D3B.20
        NCBI gene 191047
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:05 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 12 Dec 2005 15:18:56 WBPerson2970 Name_change: CGC_name: fbxa-92
        3 20 Jan 2020 12:23:10 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Gene_class: fbxa
    Allele (35)
    RNASeq_FPKM (74)
    Ortholog: WBGene00080372 Caenorhabditis remanei From_analysis: TreeFam
    Paralog (216)
    Structured_description: Concise_description: fbxa-92 encodes a protein containing an F-box, a motif predicted to mediate protein-protein interactions either with homologs of yeast Skp-1p or with other proteins; FBXA-92 also contains an FTH/DUF38 motif, which may also mediate protein-protein interaction. Paper_evidence: WBPaper00012854
          Curator_confirmed: WBPerson567
          Date_last_updated: 17 Jun 2004 00:00:00
      Automated_description: Enriched in MSpaaaaa and intestine based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-16; skn-1; and dpy-10 based on microarray and RNA-seq studies. Is affected by twelve chemicals including D-glucopyranose; Psoralens; and allantoin based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: Y119D3B.20:wp275
    Corresponding_pseudogene: Y119D3B.20
    Associated_feature: WBsf991263
      WBsf1014207
  Experimental_info: Expr_pattern: Expr1159019
      Expr2011588
      Expr2029827
    Drives_construct: WBCnstr00024203
    Construct_product: WBCnstr00024203
    Microarray_results: 176135_s_at
      A_12_P101767
      GPL3518_CE26483
    Expression_cluster: WBPaper00033065:cyc-1(RNAi)_upregulated
      WBPaper00033070:Rhine_downregulated
      WBPaper00038438:P.lumniescens_24hr_upregulated_TilingArray
      WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
      WBPaper00041370:spg-7(RNAi)_upregulated_atfs-1_dependent
      WBPaper00045017:blmp-1(tm548)_upregulated
      WBPaper00045314:S.aureus-induced_hlh-30(tm1978)
      WBPaper00045314:S.aureus-induced_N2
      WBPaper00045774:clk-1_upregulated
      WBPaper00048952:glucose_induced
      WBPaper00048971:daf-16(mgDf50)_downregulated_L1
      WBPaper00049942:HeatShock_downregulated_hsf-1(RNAi)
      WBPaper00049942:hsf-1(RNAi)_downregulated
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
      WBPaper00050990:intestine_enriched
      WBPaper00050990:intestine_expressed
      WBPaper00052884:emb-4(hc60)_upregulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00055354:eat-2(ad1116)_downregulated
      WBPaper00055354:Rapamycin-Psora-Allantoin_downregulated
      WBPaper00055354:Rapamycin-Rifampicin-Psora_downregulated
      WBPaper00055482:Tunicamycin_upregulated
      WBPaper00055626:pry-1(mu38)_downregulated
      WBPaper00056034:pals-22(jy3)_upregulated
      WBPaper00056073:R24_upregulated_nhr-86_dependent
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
      WBPaper00058969:RIS_depleted
      WBPaper00059334:sacy-1(depletion)_regulated
      WBPaper00060084:cco-1(RNAi)_upregulated_lin-40(yth27)
      WBPaper00060084:cco-1(RNAi)_upregulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00061340:M4_parent
      WBPaper00061479:hda-1(ne4752)_upregulated
      WBPaper00061479:ubc-9(ne4833)_upregulated
      WBPaper00061527:C32F10.4-D1086.2
      WBPaper00062193:skn-1(RNAi)_downregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062354:H.zoospora_6h_regulated
      WBPaper00062520:qui-1(db104)_downregulated
      WBPaper00062590:Aging_downregulated_neuron
      WBPaper00064306:Agaro-oligosaccharides_upregulated
      WBPaper00064509:static-magnetic-field_upregulated
      WBPaper00064532:pals-25(icb98)_upregulated
      WBPaper00064539:nhr-114(gk849)_upregulated
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00028789:PA14_vs_gacA_upregulated_4hr
      WBPaper00028789:PA14_vs_gacA_upregulated_8hr
      WBPaper00028789:PA14_vs_OP50_upregulated_8hr
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00035873:dpy-9_regulated
      WBPaper00035873:dpy-10_regulated
      WBPaper00038172:crh-1null_up_regulated
      WBPaper00038172:tax-6null_up_regulated
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00040963:Q100_down
      WBPaper00040963:Q200_down
      WBPaper00040963:TA200_up
      WBPaper00040963:TA300_up
      WBPaper00041002:HF_3d_2.0mM_Up
      WBPaper00041370:spg-7(RNAi)_upregulated
      WBPaper00041960:N2_fasting_upregulated_9hto12h
      WBPaper00041960:N2_fasting_upregulated_anytime
      WBPaper00042274:tbx-2(bx59)_upregulated
      WBPaper00045263:0.1mM-paraquat_downregulated
      WBPaper00045263:isp-1(qm150)_downregulated
      WBPaper00047070:N2_UV_upregulated
      WBPaper00047070:xpa-1_UV_upregulated
      WBPaper00048989:N2_allantoin_downregulated
      WBPaper00048989:N2_rapamycin_upregulated
      WBPaper00051448:P.aeruginosa_Liquid-Killing_upregulated
      WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
    Interaction: WBInteraction000504154
  Map_info: Map: III Position: -22.5743
    Positive: Positive_clone: Y119D3B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene