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WormBase Tree Display for Gene: WBGene00021525

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Name Class

WBGene00021525SMapS_parentSequenceY41D4B
IdentityVersion4
NameCGC_namecpg-24Paper_evidenceWBPaper00053350
Sequence_nameY41D4B.26
Molecular_nameY41D4B.26
Y41D4B.26.1
CE36740
Other_nameCELE_Y41D4B.26Accession_evidenceNDBBX284604
Public_namecpg-24
DB_infoDatabaseAceViewgene4C397
WormQTLgeneWBGene00021525
WormFluxgeneWBGene00021525
NDBlocus_tagCELE_Y41D4B.26
PanthergeneCAEEL|WormBase=WBGene00021525|UniProtKB=Q8WSN8
familyPTHR22669
NCBIgene176973
RefSeqproteinNM_171272.6
TREEFAMTREEFAM_IDTF315366
TrEMBLUniProtAccQ8WSN8
UniProt_GCRPUniProtAccQ8WSN8
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
222 Jul 2005 10:29:11WBPerson2970Name_changeCGC_namenhr-146
324 Apr 2008 13:36:22WBPerson2970Name_changeCGC_namenhr-146 removed
410 Jun 2020 09:20:50WBPerson1983Name_changeCGC_namecpg-24
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classcpg
Allele (47)
StrainWBStrain00037609
RNASeq_FPKM (74)
GO_annotation00085338
00125858
00125859
00125860
Ortholog (16)
ParalogWBGene00001103Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001104Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001105Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001107Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001108Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00001109Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00002246Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00021513Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable Notch binding activity. Predicted to be involved in cell fate specification.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY41D4B.26
Corresponding_CDS_historyY41D4B.26:wp124
Corresponding_transcriptY41D4B.26.1
Associated_featureWBsf645810
WBsf995497
WBsf1016766
WBsf227965
Transcription_factorWBTranscriptionFactor000862
Experimental_infoExpr_patternExpr1010383
Expr1039410
Expr1159876
Expr2007447
Expr2025683
Microarray_results (20)
Expression_clusterWBPaper00032528:L3_depleted
WBPaper00035197:fer-1_downregulated
WBPaper00036231:long-telomeres_upregulated
WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:coelomocytes_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_embryo_enriched
WBPaper00037950:hypodermis_L1-larva_expressed
WBPaper00037950:intestine_embryo_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:pharyngeal-muscle_embryo_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00042477:rsr-2(RNAi)_downregulated_TilingArray
WBPaper00042561:smg-2(RNAi)_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044260:1-methylnicotinamide_downregulated
WBPaper00044260:nicotic-acid_downregulated
WBPaper00044316:CH3HgCl_7.5uM_downregulated
WBPaper00045390:ubc-9(RNAi)_downregulated
WBPaper00045420:fertilization_upregulated_transcript
WBPaper00048690:gonad-male-biased
WBPaper00048690:male-Z1-Z4-daughter_enriched
WBPaper00048926:miaserin_upregulated_adult-day5
WBPaper00049377:MWCNT_downregulated
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049905:Age_variant_expression
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00051352:Long-Term-Association-Memory_upregulated
WBPaper00051558:aging_regulated
WBPaper00053302:alovudine_72h_regulated
WBPaper00053302:stavudine_72h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053321:embryo-to-L1_downregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:PGCs_depleted_NuGen
WBPaper00053664:ins-11(tm1053)_upregulated
WBPaper00053771:up_at_24h-NaCl
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00053888:drh-3(rrr2)_upregulated
WBPaper00054479:L.fermentum_upregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:eat-2(ad465)_downregulated
WBPaper00055482:Tunicamycin_upregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055827:pfd-6(gk493446)_upregulated
WBPaper00055944:C.butyricum_vs_OP50_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056139:soil-microbiota_upregulated
WBPaper00056167:Cry5B_upregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056446:hsb-1(cg116)_upregulated
WBPaper00056586:kri-1(ok1251);mpk-2(ok219)_downregulated
WBPaper00056826:SGP_biased
WBPaper00057041:spc-1(cas971)_upregulated
WBPaper00058598:sin-3(tm1276)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058948:npr-8(ok1439)_upregulated_OP50
WBPaper00059224:tph-1(mg280)_upregulated
WBPaper00059253:stearic-acid_downregulated
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059735:glucose_upregulated_lpin-1(RNAi)
WBPaper00059824:rnp-6(dh1127)_regulated_S.aureus
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060886:met-2(n4256)_upregulated
WBPaper00061203:let-418(n3536)_upregulated
WBPaper00061203:sin-3(tm1276)_upregulated
WBPaper00061203:spr-1(ok2144)_upregulated
WBPaper00061340:G2_and_W_blasts
WBPaper00061340:hyp4_hyp5_hyp6
WBPaper00061340:hyp7_AB_lineage
WBPaper00061340:hyp7_C_lineage
WBPaper00061340:Parents_of_PHsh_hyp8_hyp9
WBPaper00061340:P_cell
WBPaper00061340:Seam_cell
WBPaper00061340:T
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061424:Diet_MYb120_downregulated
WBPaper00061424:Diet_MYb131_upregulated
WBPaper00061527:F58E6.13_17427-ifa-3
WBPaper00061651:ALN_enriched
WBPaper00061952:daf-18(yh1)_downregulated
WBPaper00062237:dnj-21(RNAi)_upregulated_protein
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064229:B.thuringiensis-Cry5Ba_downregulated
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064403:Heat-killed-E.Coli_upregulated
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00064871:hypoxia_downregulated_F3
WBPaper00064999:miR-229-64-65-66_upregulated
WBPaper00065005:sams-3(RNAi)_upregulated
WBPaper00065005:sams-4(RNAi)_upregulated
WBPaper00065029:cadmium_upregulated
WBPaper00065096:npr-8(ok1439)_downregulated_Day1_25C
WBPaper00065560:E.coli-HB101_downregulated_F3
WBPaper00065581:hpk-1(pk1393)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00066005:RAGA-1_degradation_somatic_upregulated
WBPaper00066093:E.coli-purE_downregulated
WBPaper00066204:CdCl2_downregulated_mRNA
WBPaper00066232:ash-2(RNAi)_upregulated_WT
WBPaper00066232:hsf-1(RNAi)_downregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_downregulated_WT
cgc4386_cluster_6_1
WBPaper00025032:cluster_50
WBPaper00025141:N2_Expressed_Genes
WBPaper00029437:dcr-1_upregulated
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:hlh_1_enriched
WBPaper00031003:total_muscle_depleted
WBPaper00036286:Pattern_G
WBPaper00036383:ash-2_Day8_regulated
WBPaper00037695:WC_5-day
WBPaper00039866:ClassComp_daf-19_upregulated
WBPaper00040858:eQTL_age_regulated_developing
WBPaper00040858:eQTL_regulated_developing
WBPaper00040858:eQTL_regulated_juvenile
WBPaper00040963:Q50_down
WBPaper00040963:Q100_down
WBPaper00040963:Q200_down
WBPaper00041002:HF_11d_2.0mM_Down
WBPaper00041939:control_vs_EtBr-exposed_24h
WBPaper00041960:N2_fasting_upregulated_9hto12h
WBPaper00041960:N2_fasting_upregulated_anytime
WBPaper00046639:tyrosol_upregulated
WBPaper00048989:N2_allantoin_upregulated
WBPaper00050767:Octopamine_induced
WBPaper00053550:daf-19(m86)_upregulated_3-fold-embryo
WBPaper00056330:mrps-5(RNAi)_downregulated
[cgc5767]:cluster_12
[cgc5767]:expression_class_E
[cgc5767]:expression_class_E_pi(186_min)
[cgc5767]:expression_class_SE
[cgc5767]:expression_class_SE_pi(186_min)
Map_infoMapIVPosition-16.2832
PositivePositive_cloneY41D4BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene