WormBase Tree Display for Gene: WBGene00001107
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| WBGene00001107 | SMap | S_parent | Sequence | F58B3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dsl-5 | Person_evidence | WBPerson220 | |||||
| Sequence_name | F58B3.8 | ||||||||
| Molecular_name | F58B3.8 | ||||||||
| F58B3.8.1 | |||||||||
| CE06010 | |||||||||
| Other_name | CELE_F58B3.8 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dsl-5 | ||||||||
| DB_info | Database | AceView | gene | 4M380 | |||||
| WormQTL | gene | WBGene00001107 | |||||||
| WormFlux | gene | WBGene00001107 | |||||||
| NDB | locus_tag | CELE_F58B3.8 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001107|UniProtKB=Q20971 | |||||||
| family | PTHR22669 | ||||||||
| NCBI | gene | 186492 | |||||||
| RefSeq | protein | NM_069790.3 | |||||||
| TREEFAM | TREEFAM_ID | TF315366 | |||||||
| TrEMBL | UniProtAcc | Q20971 | |||||||
| UniProt_GCRP | UniProtAcc | Q20971 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dsl | ||||||||
| Allele (20) | |||||||||
| Strain | WBStrain00031510 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00069824 | ||||||||
| 00069825 | |||||||||
| 00069826 | |||||||||
| 00108270 | |||||||||
| 00108271 | |||||||||
| 00108272 | |||||||||
| 00108273 | |||||||||
| 00108274 | |||||||||
| Ortholog (17) | |||||||||
| Paralog | WBGene00001103 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001104 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001105 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002246 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001108 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001109 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00077551 | Caenorhabditis elegans | From_analysis | modENCODE_Pseudogenes | ||||||
| WBGene00021525 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | dsl-5 encodes a putative secreted protein with single DSL and EGF domainsin series, somewhat like Delta/LAG-2; DSL-5 belongs to a nematode-specificfamily of Delta/LAG-2-like proteins that includes DSL-1, -2, -3, -5, -6,and -7. | Paper_evidence | WBPaper00006450 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 21 Aug 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable Notch binding activity. Predicted to be involved in cell fate specification. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | F58B3.8 | |||||||
| Corresponding_transcript | F58B3.8.1 | ||||||||
| Associated_feature | WBsf997892 | ||||||||
| WBsf1018236 | |||||||||
| WBsf1018237 | |||||||||
| Experimental_info | RNAi_result (20) | ||||||||
| Expr_pattern | Expr2848 | ||||||||
| Expr1012023 | |||||||||
| Expr1152691 | |||||||||
| Expr2011109 | |||||||||
| Expr2029345 | |||||||||
| Drives_construct | WBCnstr00007162 | ||||||||
| WBCnstr00010983 | |||||||||
| WBCnstr00037082 | |||||||||
| Construct_product | WBCnstr00037082 | ||||||||
| Microarray_results (17) | |||||||||
| Expression_cluster (74) | |||||||||
| Interaction (30) | |||||||||
| Map_info | Map | IV | Position | 5.05963 | Error | 0.0057 | |||
| Positive | Positive_clone | F58B3 | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Mapping_data | Multi_point | 4270 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006450 | ||||||||
| WBPaper00017594 | |||||||||
| WBPaper00034675 | |||||||||
| WBPaper00040714 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
