WormBase Tree Display for Gene: WBGene00001105
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| WBGene00001105 | SMap | S_parent | Sequence | Y41D4B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 1 | |||||||
| Name | CGC_name | dsl-3 | Person_evidence | WBPerson220 | |||||
| Sequence_name | Y41D4B.10 | ||||||||
| Molecular_name | Y41D4B.10a | ||||||||
| Y41D4B.10a.1 | |||||||||
| CE27622 | |||||||||
| Y41D4B.10b | |||||||||
| CE48623 | |||||||||
| Y41D4B.10b.1 | |||||||||
| Other_name | CELE_Y41D4B.10 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | dsl-3 | ||||||||
| DB_info | Database | AceView | gene | 4C377 | |||||
| WormQTL | gene | WBGene00001105 | |||||||
| WormFlux | gene | WBGene00001105 | |||||||
| NDB | locus_tag | CELE_Y41D4B.10 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00001105|UniProtKB=Q95Y10 | |||||||
| family | PTHR22669 | ||||||||
| NCBI | gene | 176970 | |||||||
| RefSeq | protein | NM_001380053.1 | |||||||
| NM_067707.5 | |||||||||
| TrEMBL | UniProtAcc | U4PBR7 | |||||||
| Q95Y10 | |||||||||
| UniProt_GCRP | UniProtAcc | Q95Y10 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:23 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | dsl | ||||||||
| Allele (96) | |||||||||
| Strain | WBStrain00033146 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00089524 | ||||||||
| 00089525 | |||||||||
| 00089526 | |||||||||
| 00108263 | |||||||||
| 00108264 | |||||||||
| 00108265 | |||||||||
| 00108266 | |||||||||
| 00108267 | |||||||||
| Ortholog (25) | |||||||||
| Paralog | WBGene00001103 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001104 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002246 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00001107 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001108 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00001109 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021525 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00021513 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | dsl-3 encodes a putative secreted protein with single DSL and EGF domainsin series, somewhat like Delta/LAG-2; DSL-3 belongs to a nematode-specificfamily of Delta/LAG-2-like proteins that includes DSL-1, -2, -3, -5, -6,and -7. | Paper_evidence | WBPaper00006450 | |||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 04 Apr 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable Notch binding activity. Predicted to be involved in cell fate specification. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y41D4B.10a | |||||||
| Y41D4B.10b | |||||||||
| Corresponding_transcript | Y41D4B.10a.1 | ||||||||
| Y41D4B.10b.1 | |||||||||
| Other_sequence | CJC00218_1 | ||||||||
| CBC14972_1 | |||||||||
| CRC04777_1 | |||||||||
| CR03312 | |||||||||
| Associated_feature | WBsf645803 | ||||||||
| WBsf645804 | |||||||||
| WBsf995494 | |||||||||
| WBsf227962 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00081020 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00081002 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063601 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020476 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056377 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081001 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00067809 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063608 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00081019 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2846 | ||||||||
| Expr1023860 | |||||||||
| Expr1030705 | |||||||||
| Expr1159864 | |||||||||
| Expr2011107 | |||||||||
| Expr2029343 | |||||||||
| Drives_construct | WBCnstr00010981 | ||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (190) | |||||||||
| Interaction | WBInteraction000007263 | ||||||||
| WBInteraction000051472 | |||||||||
| WBInteraction000051473 | |||||||||
| WBInteraction000051490 | |||||||||
| WBInteraction000051491 | |||||||||
| WBInteraction000569675 | |||||||||
| Map_info | Map | IV | Position | -16.5057 | Error | 0.022376 | |||
| Positive | Positive_clone | Y41D4B | Inferred_automatically | From CDS info | |||||
| From sequence, transcript, pseudogene data | |||||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00006450 | ||||||||
| WBPaper00026373 | |||||||||
| WBPaper00034675 | |||||||||
| WBPaper00040714 | |||||||||
| WBPaper00043433 | |||||||||
| WBPaper00053579 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
