Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Gene: WBGene00021415

expand all nodes | collapse all nodes | view schema

Name Class

WBGene00021415SMapS_parentSequenceY38F2AL
IdentityVersion2
NameCGC_namensy-4Paper_evidenceWBPaper00028384
Person_evidenceWBPerson42
Sequence_nameY38F2AL.1
Molecular_nameY38F2AL.1
Y38F2AL.1.1
CE42187
Y38F2AL.1.2
Y38F2AL.1.3
Other_nameY38F2AL.hCurator_confirmedWBPerson1983
RemarkOld cosmid naming mapped via unique overlapping PCR_product on CDSs
CELE_Y38F2AL.1Accession_evidenceNDBBX284604
Public_namensy-4
DB_infoDatabaseAceViewgene4D91
WormQTLgeneWBGene00021415
WormFluxgeneWBGene00021415
NDBlocus_tagCELE_Y38F2AL.1
PanthergeneCAEEL|WormBase=WBGene00021415|UniProtKB=Q9N419
familyPTHR10671
NCBIgene177019
RefSeqproteinNM_067788.9
TREEFAMTREEFAM_IDTF316179
TrEMBLUniProtAccQ9N419
UniProt_GCRPUniProtAccQ9N419
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
208 Sep 2006 10:43:24WBPerson1847Name_changeCGC_namensy-4
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classnsy
Allele (88)
StrainWBStrain00036701
WBStrain00005274
RNASeq_FPKM (74)
GO_annotation (14)
OrthologWBGene00036655Caenorhabditis briggsaeFrom_analysisHillier-set
OrthoMCL
Inparanoid_8
WormBase-Compara
WBGene00191608Caenorhabditis brenneriFrom_analysisTreeFam
Inparanoid_8
WormBase-Compara
WBGene00128312Caenorhabditis japonicaFrom_analysisInparanoid_8
WormBase-Compara
WBGene00071890Caenorhabditis remaneiFrom_analysisInparanoid_8
WormBase-Compara
WBGene00093757Pristionchus pacificusFrom_analysisInparanoid_8
WBGene00226693Brugia malayiFrom_analysisWormBase-Compara
CBOVI.g11455Caenorhabditis bovisFrom_analysisWormBase-Compara
CSP21.g11809Caenorhabditis parvicaudaFrom_analysisWormBase-Compara
CSP26.g9839Caenorhabditis zanzibariFrom_analysisWormBase-Compara
CSP28.g22201Caenorhabditis panamensisFrom_analysisWormBase-Compara
CSP29.g22297Caenorhabditis beceiFrom_analysisWormBase-Compara
CSP31.g4556Caenorhabditis uteleiaFrom_analysisWormBase-Compara
CSP32.g13249Caenorhabditis sulstoniFrom_analysisWormBase-Compara
CSP38.g1056Caenorhabditis quiockensisFrom_analysisWormBase-Compara
CSP39.g6271Caenorhabditis waitukubuliFrom_analysisWormBase-Compara
CSP40.g16220Caenorhabditis tribulationisFrom_analysisWormBase-Compara
Cang_2012_03_13_00238.g7624Caenorhabditis angariaFrom_analysisWormBase-Compara
Cni-nsy-4Caenorhabditis nigoniFrom_analysisWormBase-Compara
Csp11.Scaffold629.g10759Caenorhabditis tropicalisFrom_analysisWormBase-Compara
Csp5_scaffold_04309.g32606Caenorhabditis sinicaFrom_analysisWormBase-Compara
FL83_17410Caenorhabditis latensFrom_analysisWormBase-Compara
GCK72_016100Caenorhabditis remaneiFrom_analysisWormBase-Compara
OTIPU.nOt.2.0.1.g08864Oscheius tipulaeFrom_analysisWormBase-Compara
Pan_g7119Panagrellus redivivusFrom_analysisWormBase-Compara
Sp34_40036300Caenorhabditis inopinataFrom_analysisWormBase-Compara
chrIV_pilon.g9792Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00241486Onchocerca volvulusFrom_analysisWormBase-Compara
WBGene00266196Strongyloides rattiFrom_analysisWormBase-Compara
WBGene00291492Trichuris murisFrom_analysisWormBase-Compara
WBGene00296323Trichuris murisFrom_analysisWormBase-Compara
ParalogWBGene00000522Caenorhabditis elegansFrom_analysisPanther
WBGene00000523Caenorhabditis elegansFrom_analysisPanther
WBGene00000526Caenorhabditis elegansFrom_analysisPanther
WBGene00010742Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00016706Caenorhabditis elegansFrom_analysisPanther
WBGene00016067Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionnsy-4 encodes a member of the PMP22/EMP/claudin/calcium channel gamma subunit family; nsy-4 is worm-specific, with obvious homologs only in C. elegans; nsy-4 functions with nsy-5 to induce the AWC chemosensory neuron ON fate by regulating the activity of the UNC-2/UNC-36 calcium channel.Paper_evidenceWBPaper00004651
WBPaper00004961
WBPaper00005654
WBPaper00005946
WBPaper00005975
WBPaper00012856
WBPaper00028384
WBPaper00039831
Curator_confirmedWBPerson1843
WBPerson567
Date_last_updated01 Oct 2012 00:00:00
Automated_descriptionEnables calcium channel inhibitor activity and protein kinase inhibitor activity. Involved in determination of left/right asymmetry in nervous system. Located in plasma membrane and plasma membrane bounded cell projection. Expressed in anterior hypodermis; blast cell; excretory cell; neurons; and tail hypodermis.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38F2AL.1
Corresponding_CDS_historyY38F2AL.1:wp122
Y38F2AL.1:wp154
Y38F2AL.1:wp187
Corresponding_transcriptY38F2AL.1.1
Y38F2AL.1.2
Y38F2AL.1.3
Other_sequence (29)
Associated_feature (12)
Experimental_infoRNAi_resultWBRNAi00027517Inferred_automaticallyRNAi_primary
WBRNAi00110922Inferred_automaticallyRNAi_primary
WBRNAi00026658Inferred_automaticallyRNAi_primary
WBRNAi00026657Inferred_automaticallyRNAi_primary
WBRNAi00001055Inferred_automaticallyRNAi_primary
WBRNAi00078922Inferred_automaticallyRNAi_primary
WBRNAi00056041Inferred_automaticallyRNAi_primary
WBRNAi00020299Inferred_automaticallyRNAi_primary
Expr_patternExpr12443
Expr12444
Expr1021400
Expr1039353
Expr1159564
Expr2014507
Expr2032746
Drives_constructWBCnstr00021104
Construct_productWBCnstr00006463
WBCnstr00021103
Microarray_results (20)
Expression_cluster (197)
Interaction (4)
Anatomy_functionWBbtf0519
WBbtf0520
WBbtf0521
WBbtf0522
WBbtf0523
Map_infoMapIVPosition-7.97649Error0.047532
PositivePositive_cloneY38F2ALInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
Reference (15)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene