WormBase Tree Display for Gene: WBGene00021415
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WBGene00021415 | SMap | S_parent | Sequence | Y38F2AL | |||
---|---|---|---|---|---|---|---|
Identity (6) | |||||||
Gene_info | Biotype | SO:0001217 | |||||
Gene_class | nsy | ||||||
Allele (88) | |||||||
Strain | WBStrain00036701 | ||||||
WBStrain00005274 | |||||||
RNASeq_FPKM (74) | |||||||
GO_annotation (14) | |||||||
Ortholog (30) | |||||||
Paralog | WBGene00000522 | Caenorhabditis elegans | From_analysis | Panther | |||
WBGene00000523 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00000526 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00010742 | Caenorhabditis elegans | From_analysis | Panther | ||||
WormBase-Compara | |||||||
WBGene00016706 | Caenorhabditis elegans | From_analysis | Panther | ||||
WBGene00016067 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||
Structured_description | Concise_description | nsy-4 encodes a member of the PMP22/EMP/claudin/calcium channel gamma subunit family; nsy-4 is worm-specific, with obvious homologs only in C. elegans; nsy-4 functions with nsy-5 to induce the AWC chemosensory neuron ON fate by regulating the activity of the UNC-2/UNC-36 calcium channel. | Paper_evidence | WBPaper00004651 | |||
WBPaper00004961 | |||||||
WBPaper00005654 | |||||||
WBPaper00005946 | |||||||
WBPaper00005975 | |||||||
WBPaper00012856 | |||||||
WBPaper00028384 | |||||||
WBPaper00039831 | |||||||
Curator_confirmed | WBPerson1843 | ||||||
WBPerson567 | |||||||
Date_last_updated | 01 Oct 2012 00:00:00 | ||||||
Automated_description | Enables calcium channel inhibitor activity and protein kinase inhibitor activity. Involved in determination of left/right asymmetry in nervous system. Located in plasma membrane and plasma membrane bounded cell projection. Expressed in anterior hypodermis; blast cell; excretory cell; neurons; and tail hypodermis. | Paper_evidence | WBPaper00065943 | ||||
Curator_confirmed | WBPerson324 | ||||||
WBPerson37462 | |||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||
Molecular_info | Corresponding_CDS | Y38F2AL.1 | |||||
Corresponding_CDS_history | Y38F2AL.1:wp122 | ||||||
Y38F2AL.1:wp154 | |||||||
Y38F2AL.1:wp187 | |||||||
Corresponding_transcript | Y38F2AL.1.1 | ||||||
Y38F2AL.1.2 | |||||||
Y38F2AL.1.3 | |||||||
Other_sequence (29) | |||||||
Associated_feature (12) | |||||||
Experimental_info | RNAi_result | WBRNAi00027517 | Inferred_automatically | RNAi_primary | |||
WBRNAi00110922 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026658 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00026657 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00001055 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00078922 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00056041 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00020299 | Inferred_automatically | RNAi_primary | |||||
Expr_pattern | Expr12443 | ||||||
Expr12444 | |||||||
Expr1021400 | |||||||
Expr1039353 | |||||||
Expr1159564 | |||||||
Expr2014507 | |||||||
Expr2032746 | |||||||
Drives_construct | WBCnstr00021104 | ||||||
Construct_product | WBCnstr00006463 | ||||||
WBCnstr00021103 | |||||||
Microarray_results (20) | |||||||
Expression_cluster (197) | |||||||
Interaction | WBInteraction000008904 | ||||||
WBInteraction000052103 | |||||||
WBInteraction000052104 | |||||||
WBInteraction000518739 | |||||||
Anatomy_function | WBbtf0519 | ||||||
WBbtf0520 | |||||||
WBbtf0521 | |||||||
WBbtf0522 | |||||||
WBbtf0523 | |||||||
Map_info | Map | IV | Position | -7.97649 | Error | 0.047532 | |
Positive | Positive_clone | Y38F2AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||
Pseudo_map_position | |||||||
Reference (15) | |||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||
Method | Gene |