WormBase Tree Display for Gene: WBGene00021415
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| WBGene00021415 | SMap | S_parent | Sequence | Y38F2AL | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nsy-4 | Paper_evidence | WBPaper00028384 | |||||
| Person_evidence | WBPerson42 | ||||||||
| Sequence_name | Y38F2AL.1 | ||||||||
| Molecular_name | Y38F2AL.1 | ||||||||
| Y38F2AL.1.1 | |||||||||
| CE42187 | |||||||||
| Y38F2AL.1.2 | |||||||||
| Y38F2AL.1.3 | |||||||||
| Other_name | Y38F2AL.h | Curator_confirmed | WBPerson1983 | ||||||
| Remark | Old cosmid naming mapped via unique overlapping PCR_product on CDSs | ||||||||
| CELE_Y38F2AL.1 | Accession_evidence | NDB | BX284604 | ||||||
| Public_name | nsy-4 | ||||||||
| DB_info | Database | AceView | gene | 4D91 | |||||
| WormQTL | gene | WBGene00021415 | |||||||
| WormFlux | gene | WBGene00021415 | |||||||
| NDB | locus_tag | CELE_Y38F2AL.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021415|UniProtKB=Q9N419 | |||||||
| family | PTHR10671 | ||||||||
| NCBI | gene | 177019 | |||||||
| RefSeq | protein | NM_067788.9 | |||||||
| TREEFAM | TREEFAM_ID | TF316179 | |||||||
| TrEMBL | UniProtAcc | Q9N419 | |||||||
| UniProt_GCRP | UniProtAcc | Q9N419 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 08 Sep 2006 10:43:24 | WBPerson1847 | Name_change | CGC_name | nsy-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nsy | ||||||||
| Allele (88) | |||||||||
| Strain | WBStrain00036701 | ||||||||
| WBStrain00005274 | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (14) | |||||||||
| Ortholog (30) | |||||||||
| Paralog | WBGene00000522 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00000523 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00000526 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00010742 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00016706 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00016067 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | nsy-4 encodes a member of the PMP22/EMP/claudin/calcium channel gamma subunit family; nsy-4 is worm-specific, with obvious homologs only in C. elegans; nsy-4 functions with nsy-5 to induce the AWC chemosensory neuron ON fate by regulating the activity of the UNC-2/UNC-36 calcium channel. | Paper_evidence | WBPaper00004651 | |||||
| WBPaper00004961 | |||||||||
| WBPaper00005654 | |||||||||
| WBPaper00005946 | |||||||||
| WBPaper00005975 | |||||||||
| WBPaper00012856 | |||||||||
| WBPaper00028384 | |||||||||
| WBPaper00039831 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| WBPerson567 | |||||||||
| Date_last_updated | 01 Oct 2012 00:00:00 | ||||||||
| Automated_description | Enables calcium channel inhibitor activity and protein kinase inhibitor activity. Involved in determination of left/right asymmetry in nervous system. Located in plasma membrane and plasma membrane bounded cell projection. Expressed in anterior hypodermis; blast cell; excretory cell; neurons; and tail hypodermis. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y38F2AL.1 | |||||||
| Corresponding_CDS_history | Y38F2AL.1:wp122 | ||||||||
| Y38F2AL.1:wp154 | |||||||||
| Y38F2AL.1:wp187 | |||||||||
| Corresponding_transcript | Y38F2AL.1.1 | ||||||||
| Y38F2AL.1.2 | |||||||||
| Y38F2AL.1.3 | |||||||||
| Other_sequence (29) | |||||||||
| Associated_feature (12) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00027517 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00110922 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026658 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00026657 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00001055 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00078922 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00056041 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020299 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr12443 | ||||||||
| Expr12444 | |||||||||
| Expr1021400 | |||||||||
| Expr1039353 | |||||||||
| Expr1159564 | |||||||||
| Expr2014507 | |||||||||
| Expr2032746 | |||||||||
| Drives_construct | WBCnstr00021104 | ||||||||
| Construct_product | WBCnstr00006463 | ||||||||
| WBCnstr00021103 | |||||||||
| Microarray_results (20) | |||||||||
| Expression_cluster (197) | |||||||||
| Interaction | WBInteraction000008904 | ||||||||
| WBInteraction000052103 | |||||||||
| WBInteraction000052104 | |||||||||
| WBInteraction000518739 | |||||||||
| Anatomy_function | WBbtf0519 | ||||||||
| WBbtf0520 | |||||||||
| WBbtf0521 | |||||||||
| WBbtf0522 | |||||||||
| WBbtf0523 | |||||||||
| Map_info | Map | IV | Position | -7.97649 | Error | 0.047532 | |||
| Positive | Positive_clone | Y38F2AL | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00028384 | ||||||||
| WBPaper00029404 | |||||||||
| WBPaper00031175 | |||||||||
| WBPaper00033668 | |||||||||
| WBPaper00039831 | |||||||||
| WBPaper00040144 | |||||||||
| WBPaper00041411 | |||||||||
| WBPaper00043587 | |||||||||
| WBPaper00044621 | |||||||||
| WBPaper00045034 | |||||||||
| WBPaper00048287 | |||||||||
| WBPaper00049531 | |||||||||
| WBPaper00052651 | |||||||||
| WBPaper00052675 | |||||||||
| WBPaper00065331 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
