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WormBase Tree Display for Gene: WBGene00021397

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Name Class

WBGene00021397SMapS_parentSequenceY38C1AA
IdentityVersion1
NameSequence_nameY38C1AA.6
Molecular_nameY38C1AA.6
Y38C1AA.6.1
CE39821
Other_nameCELE_Y38C1AA.6Accession_evidenceNDBBX284604
Public_nameY38C1AA.6
DB_infoDatabaseAceViewgene4A917
WormQTLgeneWBGene00021397
WormFluxgeneWBGene00021397
NDBlocus_tagCELE_Y38C1AA.6
NCBIgene189640
RefSeqproteinNM_001392239.1
TREEFAMTREEFAM_IDTF351241
TrEMBLUniProtAccQ9N430
UniProt_GCRPUniProtAccQ9N430
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:04WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
StatusLive
Gene_infoBiotypeSO:0001217
Allele (33)
RNASeq_FPKM (74)
Contained_in_operonCEOP4645
Ortholog (35)
ParalogWBGene00007816Caenorhabditis elegansFrom_analysisTreeFam
WBGene00008266Caenorhabditis elegansFrom_analysisTreeFam
WBGene00008267Caenorhabditis elegansFrom_analysisTreeFam
WBGene00008269Caenorhabditis elegansFrom_analysisTreeFam
WBGene00009077Caenorhabditis elegansFrom_analysisTreeFam
WormBase-Compara
WBGene00044085Caenorhabditis elegansFrom_analysismodENCODE_Pseudogenes
WBGene00022838Caenorhabditis elegansFrom_analysisTreeFam
WBGene00219750Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable metal ion binding activity.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY38C1AA.6
Corresponding_CDS_historyY38C1AA.6:wp154
Corresponding_transcriptY38C1AA.6.1
Other_sequenceGO239245.1
Experimental_infoRNAi_resultWBRNAi00079738Inferred_automaticallyRNAi_primary
WBRNAi00079554Inferred_automaticallyRNAi_primary
WBRNAi00079508Inferred_automaticallyRNAi_primary
WBRNAi00079784Inferred_automaticallyRNAi_primary
WBRNAi00079830Inferred_automaticallyRNAi_primary
WBRNAi00079692Inferred_automaticallyRNAi_primary
WBRNAi00079646Inferred_automaticallyRNAi_primary
WBRNAi00055988Inferred_automaticallyRNAi_primary
WBRNAi00079600Inferred_automaticallyRNAi_primary
Expr_patternExpr1021806
Expr1159507
Expr2007293
Expr2025526
Microarray_results (15)
Expression_clusterWBPaper00037950:A-class-motor-neurons_L1-larva_expressed
WBPaper00037950:AVA-neuron_L1-larva_expressed
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L1-larva_expressed
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:coelomocytes_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:intestine_larva_enriched
WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00038438:P.lumniescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_upregulated_TilingArray
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00042561:smgl-1(RNAi)_downregulated
WBPaper00044736:flat_dev_expression
WBPaper00044786:emr-1(gk119)_downregulated
WBPaper00045571:germline-ablation_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00049334:CE_intestine_enriched
WBPaper00049498:npr-1(ur89)_regulated_5
WBPaper00049736:daf-2(e1370)_upregulated_15deg-then-25deg(12hr)
WBPaper00049942:HeatShock_downregulated_hsf-1(+)
WBPaper00050163:let-418(RNAi)_upregulated_100-cell-embryo
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_adult_25C
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050859:upregulated_P-granule(-)GFP(-)_vs_control_day2-adult
WBPaper00050990:intestine_enriched
WBPaper00050990:intestine_expressed
WBPaper00051558:aging_regulated
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15);elt-7(tm840)_upregulated
WBPaper00053606:N2_vs_elt-2(ca15)_upregulated
WBPaper00053771:up_at_3h-NaCl
WBPaper00053810:daf-2(e1370)_upregulated
WBPaper00053810:isp-1(qm150)_upregulated
WBPaper00053810:nuo-6(qm200)_upregulated
WBPaper00054192:cold-shock_upregulated
WBPaper00055013:hmg-3(bar24)_upregulated
WBPaper00055482:pmt-2(RNAi)_upregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055941:atfs-1(et15)_upregulated
WBPaper00055941:nuo-6(qm200)_upregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056034:pals-25(jy9)_upregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:male_enriched_siRNA
WBPaper00056167:Cry5B_downregulated
WBPaper00056169:rrf-3(pk1426)_downregulated_L1
WBPaper00056169:rrf-3(pk1426)_downregulated_L2
WBPaper00056443:sek-1(km4)_downregulated
WBPaper00056586:kri-1(ok1251)_upregulated
WBPaper00056809:smn-1(ok355)_downregulated
WBPaper00056826:hmc_biased
WBPaper00057041:spc-1(cas971)_downregulated
WBPaper00057158:mdt-15(tm2182)_dependent_15C_downregulated
WBPaper00058598:mex-1(or286)_upregulated
WBPaper00058598:mex-3(eu149)_downregulated
WBPaper00058948:PA14_downregulated
WBPaper00059117:B.subtilis_upregulated
WBPaper00059378:lmn-1(Y59C)_downregulated
WBPaper00059421:daf-3(mgDf90)_downregulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_N2
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060661:sensory-neuron_depleted
WBPaper00061007:HB101_upregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061081:E.faecalis_upregulated_skpo-1(ok1640)
WBPaper00061341:28C_24h_upregulated
WBPaper00061341:28C_48h_upregulated
WBPaper00061527:F58F9.3_11574-R07B7.6
WBPaper00061699:daf-18(ok480)_downregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062184:PA14_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062440:crh-1(syb385)_downregulated
WBPaper00062446:nhr-8(hd117)_upregulated
WBPaper00064088:Day-1-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064632:daf-2(e1370)_upregulated_intestine
WBPaper00064716:paraquat_downregulated
WBPaper00065734:unc-25(e156)_upregulated
WBPaper00065746:eat-2(ad1113)_upregulated
WBPaper00065749:endu-2(tm4977)_upregulated
WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
WBPaper00065823:pmk-1(km25)_downregulated
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:tetraploid_vs_diploid_upregulated
WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
WBPaper00066232:hsf-1(RNAi)_upregulated_WT
WBPaper00036286:Pattern_D
WBPaper00037695:WC_5-day
WBPaper00040184:hcf-1up_sir-2.1up_daf-2up
WBPaper00045263:nuo-6(qm200)_upregulated
WBPaper00048989:N2_rapamycin_upregulated
WBPaper00053236:daf-16(mgDF50)_regulated_Starved
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
InteractionWBInteraction000051066
WBInteraction000051112
WBInteraction000051158
WBInteraction000051204
WBInteraction000051250
WBInteraction000051296
WBInteraction000051342
Map_infoPositivePositive_cloneY38C1AAInferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionIV-26.8825
ReferenceWBPaper00027315
MethodGene