WormBase Tree Display for Gene: WBGene00021343
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| WBGene00021343 | SMap | S_parent | Sequence | Y37B11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | cutl-23 | Person_evidence | WBPerson52 | |||||
| Sequence_name | Y37B11A.1 | ||||||||
| Molecular_name | Y37B11A.1a | ||||||||
| Y37B11A.1a.1 | |||||||||
| CE51614 | |||||||||
| Y37B11A.1b | |||||||||
| CE51644 | |||||||||
| Y37B11A.1b.1 | |||||||||
| Other_name | CELE_Y37B11A.1 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | cutl-23 | ||||||||
| DB_info | Database | AceView | gene | 3G863 | |||||
| WormQTL | gene | WBGene00021343 | |||||||
| WormFlux | gene | WBGene00021343 | |||||||
| NDB | locus_tag | CELE_Y37B11A.1 | |||||||
| Panther | gene | CAEEL|Gene_ORFName=CELE_Y37B11A.1|UniProtKB=A0A164D3B2 | |||||||
| family | PTHR22907 | ||||||||
| NCBI | gene | 189610 | |||||||
| RefSeq | protein | NM_001330886.3 | |||||||
| NM_001330885.2 | |||||||||
| TrEMBL | UniProtAcc | A0A168H2V5 | |||||||
| A0A164D3B2 | |||||||||
| UniProt_GCRP | UniProtAcc | A0A164D3B2 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 07 May 2008 10:04:34 | WBPerson2970 | Name_change | CGC_name | cutl-23 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | cutl | ||||||||
| Allele (74) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (32) | |||||||||
| Paralog | WBGene00000853 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00003482 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00003497 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00007800 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015865 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015993 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00016048 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017965 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00019570 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00020579 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | Y37B11A.1 is orthologous to the human gene COLLAGEN TYPE VI, ALPHA 3 CHAIN (COL6A3; OMIM:120250), which when mutated leads to disease. | Curator_confirmed | WBPerson1823 | |||||
| WBPerson567 | |||||||||
| Date_last_updated | 06 Aug 2004 00:00:00 | ||||||||
| Automated_description | Enriched in several structures, including AVK; accessory cell; head neurons; sensory neurons; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; Tunicamycin; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; Zona pellucida-like domain; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; Zona pellucida domain; and Zona pellucida, ZP-C domain. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y37B11A.1a | |||||||
| Y37B11A.1b | |||||||||
| Corresponding_CDS_history | Y37B11A.1:wp253 | ||||||||
| Corresponding_transcript | Y37B11A.1a.1 | ||||||||
| Y37B11A.1b.1 | |||||||||
| Other_sequence (18) | |||||||||
| Associated_feature | WBsf658990 | ||||||||
| WBsf658991 | |||||||||
| WBsf992525 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00055862 | Inferred_automatically | RNAi_primary | |||||
| Expr_pattern | Chronogram619 | ||||||||
| Expr1023365 | |||||||||
| Expr1039311 | |||||||||
| Expr1159390 | |||||||||
| Expr2010620 | |||||||||
| Expr2028860 | |||||||||
| Drives_construct | WBCnstr00002853 | ||||||||
| WBCnstr00024576 | |||||||||
| Construct_product | WBCnstr00024576 | ||||||||
| Microarray_results (16) | |||||||||
| Expression_cluster (194) | |||||||||
| Map_info | Map | III | Position | -1.44634 | Error | 2.6e-05 | |||
| Positive | Positive_clone | Y37B11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
