WormBase Tree Display for Gene: WBGene00021343

WBGene00021343 SMap: S_parent: Sequence: Y37B11A
  Identity: Version: 2
    Name: CGC_name: cutl-23 Person_evidence: WBPerson52
      Sequence_name: Y37B11A.1
      Molecular_name: Y37B11A.1a
        Y37B11A.1a.1
        CE51614
        Y37B11A.1b
        CE51644
        Y37B11A.1b.1
      Other_name: CELE_Y37B11A.1 Accession_evidence: NDB BX284603
      Public_name: cutl-23
    DB_info: Database: AceView gene 3G863
        WormQTL gene WBGene00021343
        WormFlux gene WBGene00021343
        NDB locus_tag CELE_Y37B11A.1
        Panther gene CAEEL|Gene_ORFName=CELE_Y37B11A.1|UniProtKB=A0A164D3B2
          family PTHR22907
        NCBI gene 189610
        RefSeq protein NM_001330886.3
            NM_001330885.2
        TrEMBL UniProtAcc A0A168H2V5
            A0A164D3B2
        UniProt_GCRP UniProtAcc A0A164D3B2
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:04 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 07 May 2008 10:04:34 WBPerson2970 Name_change: CGC_name: cutl-23
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: cutl
    Allele (74)
    RNASeq_FPKM (74)
    Ortholog: WBGene00030777 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            WormBase-Compara
      WBGene00030758 Caenorhabditis briggsae From_analysis: OrthoMCL
            OMA
            WormBase-Compara
      WBGene00055592 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00155443 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00130608 Caenorhabditis japonica From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030759 Caenorhabditis briggsae From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00226637 Brugia malayi From_analysis: WormBase-Compara
      CBOVI.g4102 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g5103 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g18537 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g9724 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g15120 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g20249 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g15999 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g1728 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8762 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g3655 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00036.g2038 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_03043.g17738 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_03043.g17739 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cang_2012_03_13_13161.g24113 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-cutl-23 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold568.g4195 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00051.g2603 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_19819 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_010625 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g03527 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g22445 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_30138400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g7789 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00245448 Onchocerca volvulus From_analysis: WormBase-Compara
      WBGene00098534 Pristionchus pacificus From_analysis: WormBase-Compara
    Paralog: WBGene00000853 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003482 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003497 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00007800 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015865 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015993 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00016048 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00017965 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019570 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020579 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: Y37B11A.1 is orthologous to the human gene COLLAGEN TYPE VI, ALPHA 3 CHAIN (COL6A3; OMIM:120250), which when mutated leads to disease. Curator_confirmed: WBPerson1823
            WBPerson567
          Date_last_updated: 06 Aug 2004 00:00:00
      Automated_description: Enriched in several structures, including AVK; accessory cell; head neurons; sensory neurons; and somatic gonad precursor based on RNA-seq and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and daf-12 based on microarray; tiling array; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; Tunicamycin; and stavudine based on microarray and RNA-seq studies. Is predicted to encode a protein with the following domains: von Willebrand factor, type A; Zona pellucida-like domain; von Willebrand factor type A domain; von Willebrand factor A-like domain superfamily; Zona pellucida domain; and Zona pellucida, ZP-C domain. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y37B11A.1a
      Y37B11A.1b
    Corresponding_CDS_history: Y37B11A.1:wp253
    Corresponding_transcript: Y37B11A.1a.1
      Y37B11A.1b.1
    Other_sequence (18)
    Associated_feature: WBsf658990
      WBsf658991
      WBsf992525
  Experimental_info: RNAi_result: WBRNAi00055862 Inferred_automatically: RNAi_primary
    Expr_pattern: Chronogram619
      Expr1023365
      Expr1039311
      Expr1159390
      Expr2010620
      Expr2028860
    Drives_construct: WBCnstr00002853
      WBCnstr00024576
    Construct_product: WBCnstr00024576
    Microarray_results (16)
    Expression_cluster (194)
  Map_info: Map: III Position: -1.44634 Error: 2.6e-05
    Positive: Positive_clone: Y37B11A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene