WormBase Tree Display for Gene: WBGene00021325
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WBGene00021325 | SMap | S_parent | Sequence | Y34B4A | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name (5) | |||||||||
DB_info | Database | AceView | gene | XF875 | |||||
WormQTL | gene | WBGene00021325 | |||||||
WormFlux | gene | WBGene00021325 | |||||||
NDB | locus_tag | CELE_Y34B4A.9 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00021325|UniProtKB=Q95Y28 | |||||||
family | PTHR34311 | ||||||||
NCBI | gene | 180796 | |||||||
RefSeq | protein | NM_076490.7 | |||||||
TREEFAM | TREEFAM_ID | TF315792 | |||||||
TrEMBL | UniProtAcc | Q95Y28 | |||||||
UniProt_GCRP | UniProtAcc | Q95Y28 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 08 Jul 2021 14:36:59 | WBPerson1983 | Name_change | CGC_name | nspg-13 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | nspg | ||||||||
Allele (25) | |||||||||
RNASeq_FPKM (74) | |||||||||
Contained_in_operon | CEOPX056 | ||||||||
Ortholog (24) | |||||||||
Paralog | WBGene00009883 | Caenorhabditis elegans | From_analysis | Panther | |||||
WBGene00010793 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00011592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00011856 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00017591 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00018951 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WBGene00021322 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00022490 | Caenorhabditis elegans | From_analysis | Panther | ||||||
WormBase-Compara | |||||||||
WBGene00021805 | Caenorhabditis elegans | From_analysis | Panther | ||||||
Structured_description | Automated_description | Enriched in AFD; head mesodermal cell; intestine; and pharyngeal muscle cell based on tiling array; RNA-seq; and proteomic studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by fifteen chemicals including methylmercuric chloride; Zidovudine; and Psoralens based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | Y34B4A.9 | |||||||
Corresponding_transcript | Y34B4A.9.1 | ||||||||
Other_sequence (25) | |||||||||
Associated_feature | WBsf662769 | ||||||||
WBsf662770 | |||||||||
WBsf235697 | |||||||||
Experimental_info | RNAi_result | WBRNAi00055825 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00033631 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1025660 | ||||||||
Expr1039301 | |||||||||
Expr1159353 | |||||||||
Expr2007220 | |||||||||
Expr2025452 | |||||||||
Drives_construct | WBCnstr00024579 | ||||||||
Construct_product | WBCnstr00024579 | ||||||||
Microarray_results (18) | |||||||||
Expression_cluster (235) | |||||||||
SAGE_tag | SAGE:gctgtgggtc | Strand | Antisense | ||||||
SAGE:tctgcggtcc | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:gcatcgtttg | Strand | Antisense | |||||||
SAGE:ttctgggctt | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ggctctgaat | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
SAGE:ttctgggcttgtgaata | Strand | Sense | |||||||
Unambiguously_mapped | |||||||||
Interaction | WBInteraction000561811 | ||||||||
WBInteraction000562846 | |||||||||
WBInteraction000569368 | |||||||||
WBInteraction000572287 | |||||||||
WBInteraction000586356 | |||||||||
Map_info | Positive | Positive_clone | Y34B4A | Inferred_automatically | From sequence, transcript, pseudogene data | ||||
Interpolated_map_position | X | -5.92198 | |||||||
Reference | WBPaper00041771 | ||||||||
WBPaper00058665 | |||||||||
Method | Gene |