WormBase Tree Display for Gene: WBGene00010793
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| WBGene00010793 | SMap | S_parent | Sequence | LLC1 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | nspg-9 | Person_evidence | WBPerson18244 | |||||
| Sequence_name | LLC1.2 | ||||||||
| Molecular_name | LLC1.2a | ||||||||
| LLC1.2a.1 | |||||||||
| CE16261 | |||||||||
| LLC1.2b | |||||||||
| CE44649 | |||||||||
| LLC1.2c | |||||||||
| CE46503 | |||||||||
| LLC1.2b.1 | |||||||||
| LLC1.2c.1 | |||||||||
| Other_name | CELE_LLC1.2 | Accession_evidence | NDB | BX284604 | |||||
| Public_name | nspg-9 | ||||||||
| DB_info | Database | AceView | gene | 4P227 | |||||
| WormQTL | gene | WBGene00010793 | |||||||
| WormFlux | gene | WBGene00010793 | |||||||
| NDB | locus_tag | CELE_LLC1.2 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00010793|UniProtKB=O17954 | |||||||
| family | PTHR34311 | ||||||||
| NCBI | gene | 178386 | |||||||
| RefSeq | protein | NM_001268878.2 | |||||||
| NM_001268880.3 | |||||||||
| NM_001268879.3 | |||||||||
| TREEFAM | TREEFAM_ID | TF315792 | |||||||
| TrEMBL | UniProtAcc | O17954 | |||||||
| G3MU72 | |||||||||
| D3YT80 | |||||||||
| UniProt_GCRP | UniProtAcc | O17954 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:51 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 10 Jul 2021 01:08:06 | WBPerson1983 | Name_change | CGC_name | nspg-9 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | nspg | ||||||||
| Allele (147) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| Ortholog (24) | |||||||||
| Paralog | WBGene00009883 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WBGene00018951 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021321 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00021325 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00011592 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00022490 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021805 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00017591 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00021322 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WBGene00011856 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| Structured_description | Automated_description | Enriched in head mesodermal cell; intestine; neurons; and retrovesicular ganglion based on tiling array; RNA-seq; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; proteomic; and RNA-seq studies. Is affected by twenty-five chemicals including methylmercuric chloride; rotenone; and mianserin based on microarray and RNA-seq studies. | Paper_evidence | WBPaper00065943 | |||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | LLC1.2a | |||||||
| LLC1.2b | |||||||||
| LLC1.2c | |||||||||
| Corresponding_transcript | LLC1.2a.1 | ||||||||
| LLC1.2b.1 | |||||||||
| LLC1.2c.1 | |||||||||
| Other_sequence | CJC07560_1 | ||||||||
| FD514885.1 | |||||||||
| CBC09583_1 | |||||||||
| CRC09500_1 | |||||||||
| CJC00585_1 | |||||||||
| MJ00051 | |||||||||
| Associated_feature (13) | |||||||||
| Experimental_info | RNAi_result | WBRNAi00001286 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00050708 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00017081 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00023538 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00034329 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr1019708 | ||||||||
| Expr1034728 | |||||||||
| Expr1154409 | |||||||||
| Expr2005112 | |||||||||
| Expr2023333 | |||||||||
| Microarray_results (24) | |||||||||
| Expression_cluster (227) | |||||||||
| Interaction (50) | |||||||||
| Map_info | Map | IV | Position | 12.1168 | |||||
| Positive | Positive_clone | LLC1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
