WormBase Tree Display for Gene: WBGene00020972
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WBGene00020972 | SMap | S_parent | Sequence | W03B1 | |||||
---|---|---|---|---|---|---|---|---|---|
Identity | Version | 2 | |||||||
Name | CGC_name | trpl-2 | Person_evidence | WBPerson260 | |||||
Sequence_name | W03B1.2 | ||||||||
Molecular_name | W03B1.2 | ||||||||
W03B1.2.1 | |||||||||
CE34601 | |||||||||
Other_name | CELE_W03B1.2 | Accession_evidence | NDB | BX284604 | |||||
Public_name | trpl-2 | ||||||||
DB_info | Database | AceView | gene | 4F95 | |||||
WormQTL | gene | WBGene00020972 | |||||||
WormFlux | gene | WBGene00020972 | |||||||
NDB | locus_tag | CELE_W03B1.2 | |||||||
Panther | gene | CAEEL|WormBase=WBGene00020972|UniProtKB=Q23141 | |||||||
family | PTHR13800 | ||||||||
NCBI | gene | 177198 | |||||||
RefSeq | protein | NM_068140.4 | |||||||
TREEFAM | TREEFAM_ID | TF315286 | |||||||
TrEMBL | UniProtAcc | Q23141 | |||||||
UniProt_GCRP | UniProtAcc | Q23141 | |||||||
Species | Caenorhabditis elegans | ||||||||
History | Version_change | 1 | 28 May 2004 13:31:03 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
2 | 11 Apr 2012 13:49:30 | WBPerson2970 | Name_change | CGC_name | trpl-2 | ||||
Status | Live | ||||||||
Gene_info | Biotype | SO:0001217 | |||||||
Gene_class | trpl | ||||||||
Allele (104) | |||||||||
Strain | WBStrain00032570 | ||||||||
WBStrain00037290 | |||||||||
RNASeq_FPKM (74) | |||||||||
GO_annotation | 00077413 | ||||||||
00077414 | |||||||||
00077415 | |||||||||
00077416 | |||||||||
Ortholog (22) | |||||||||
Paralog | WBGene00004149 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
WormBase-Compara | |||||||||
WBGene00021408 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
WormBase-Compara | |||||||||
WBGene00021404 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
Inparanoid_8 | |||||||||
WormBase-Compara | |||||||||
WBGene00000425 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001651 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001795 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00001796 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
WBGene00008731 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
Structured_description | Automated_description | Predicted to enable monoatomic cation channel activity. Predicted to be involved in monoatomic cation transmembrane transport. Predicted to be located in membrane. | Paper_evidence | WBPaper00065943 | |||||
Curator_confirmed | WBPerson324 | ||||||||
WBPerson37462 | |||||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
Molecular_info | Corresponding_CDS | W03B1.2 | |||||||
Corresponding_CDS_history | W03B1.2:wp102 | ||||||||
Corresponding_transcript | W03B1.2.1 | ||||||||
Associated_feature | WBsf645916 | ||||||||
WBsf228186 | |||||||||
Experimental_info | RNAi_result | WBRNAi00019538 | Inferred_automatically | RNAi_primary | |||||
WBRNAi00036216 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00103561 | Inferred_automatically | RNAi_primary | |||||||
WBRNAi00054653 | Inferred_automatically | RNAi_primary | |||||||
Expr_pattern | Expr1015534 | ||||||||
Expr1158196 | |||||||||
Expr2017504 | |||||||||
Expr2035643 | |||||||||
Drives_construct | WBCnstr00024753 | ||||||||
Construct_product | WBCnstr00024753 | ||||||||
Microarray_results (20) | |||||||||
Expression_cluster (127) | |||||||||
Interaction (6) | |||||||||
Map_info | Map | IV | Position | 0.154949 | |||||
Positive | Positive_clone | W03B1 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
Pseudo_map_position | |||||||||
Reference | WBPaper00027280 | ||||||||
WBPaper00038142 | |||||||||
WBPaper00043908 | |||||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
Method | Gene |