WormBase Tree Display for Gene: WBGene00020840

WBGene00020840 SMap: S_parent: Sequence: T27A3
  Identity: Version: 2
    Name: CGC_name: spch-3 Paper_evidence: WBPaper00038451
          Person_evidence: WBPerson109
      Sequence_name: T27A3.4
      Molecular_name: T27A3.4
        T27A3.4.1
        CE14223
      Other_name: CELE_T27A3.4 Accession_evidence: NDB BX284601
      Public_name: spch-3
    DB_info: Database: AceView gene 1G675
        WormQTL gene WBGene00020840
        WormFlux gene WBGene00020840
        NDB locus_tag CELE_T27A3.4
        NCBI gene 172293
        RefSeq protein NM_059359.5
        TrEMBL UniProtAcc P91497
        UniProt_GCRP UniProtAcc P91497
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 05 Nov 2014 11:16:03 WBPerson2970 Name_change: CGC_name: spch-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spch
    Allele (20)
    RNASeq_FPKM (74)
    GO_annotation: 00051191
      00051192
    Ortholog: WBGene00039786 Caenorhabditis briggsae From_analysis: OMA
      WBGene00143838 Caenorhabditis brenneri From_analysis: OMA
      chrI_pilon.g1067 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00007307 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00015689 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: spch-3 encodes one of three C. elegans small, highly basic proteins that have similarity to mouse testis-specific histone H1, the human nucleotide binding and splicing-associated protein SON, and the mollusk protamine-like SNBPs (sperm nuclear basic proteins); SPCH-3 associates specifically with spermatogenic meiotic and mature sperm chromatin. Paper_evidence: WBPaper00028451
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Nov 2014 00:00:00
      Automated_description: Part of chromatin. Expressed in sperm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: T27A3.4
    Corresponding_transcript: T27A3.4.1
    Other_sequence: CBC01763_1
      CR02215
      CRC00384_1
    Associated_feature: WBsf643330
      WBsf217749
  Experimental_info: RNAi_result: WBRNAi00040317 Inferred_automatically: RNAi_primary
      WBRNAi00040316 Inferred_automatically: RNAi_primary
      WBRNAi00002935 Inferred_automatically: RNAi_primary
      WBRNAi00004317 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4212
      Expr1157809
      Expr2016023
      Expr2034258
    Drives_construct: WBCnstr00024846
    Construct_product: WBCnstr00024846
    Antibody: WBAntibody00001149
      WBAntibody00001150
      WBAntibody00001151
      WBAntibody00001152
    Microarray_results (19)
    Expression_cluster (245)
    Interaction (191)
  Map_info: Map: I Position: 0.781796
    Positive: Positive_clone: T27A3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00038491
    WBPaper00047279
    WBPaper00054442
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene