WormBase Tree Display for Gene: WBGene00007307

WBGene00007307 SMap: S_parent: Sequence: C04G2
  Identity: Version: 2
    Name: CGC_name: spch-1 Paper_evidence: WBPaper00038451
          Person_evidence: WBPerson109
      Sequence_name: C04G2.8
      Molecular_name: C04G2.8
        C04G2.8.1
        CE05216
      Other_name: CELE_C04G2.8 Accession_evidence: NDB BX284604
      Public_name: spch-1
    DB_info: Database: AceView gene 4K876
        WormQTL gene WBGene00007307
        WormFlux gene WBGene00007307
        NDB locus_tag CELE_C04G2.8
        NCBI gene 177877
        RefSeq protein NM_069436.7
        TrEMBL UniProtAcc Q17626
        UniProt_GCRP UniProtAcc Q17626
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:47 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 05 Nov 2014 11:16:03 WBPerson2970 Name_change: CGC_name: spch-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: spch
    Allele (17)
    Strain: WBStrain00032891
      WBStrain00037156
    RNASeq_FPKM (74)
    GO_annotation: 00058727
      00058728
      00058729
    Ortholog: WBGene00039786 Caenorhabditis briggsae From_analysis: OMA
      WBGene00085827 Caenorhabditis remanei From_analysis: OMA
      chrIV_pilon.g11507 Caenorhabditis elegans From_analysis: WormBase-Compara
    Paralog: WBGene00015689 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00020840 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: spch-1 encodes one of three C. elegans small, highly basic proteins that have similarity to mouse testis-specific histone H1, the human nucleotide binding and splicing-associated protein SON, and the mollusk protamine-like SNBPs (sperm nuclear basic proteins); spch-1(RNAi) has been reported to result in low penetrance male meiosis defects; SPCH-1 associates specifically with spermatogenic meiotic and mature sperm chromatin. Paper_evidence: WBPaper00028451
          Curator_confirmed: WBPerson1843
          Date_last_updated: 12 Nov 2014 00:00:00
      Automated_description: Involved in male meiotic nuclear division. Part of chromatin. Expressed in sperm. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: C04G2.8
    Corresponding_transcript: C04G2.8.1
    Associated_feature: WBsf997556
      WBsf997557
      WBsf230669
  Experimental_info: RNAi_result: WBRNAi00010151 Inferred_automatically: RNAi_primary
      WBRNAi00022660 Inferred_automatically: RNAi_primary
      WBRNAi00039663 Inferred_automatically: RNAi_primary
      WBRNAi00028460 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4212
      Expr1011914
      Expr1143757
      Expr2016021
      Expr2034256
    Drives_construct: WBCnstr00033841
    Construct_product: WBCnstr00033841
    Antibody: WBAntibody00001149
      WBAntibody00001150
      WBAntibody00001151
      WBAntibody00001152
    Microarray_results (17)
    Expression_cluster (230)
    Interaction (216)
  Map_info: Map: IV Position: 4.52976
    Positive: Positive_clone: C04G2 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00028451
    WBPaper00035324
    WBPaper00038491
    WBPaper00047279
    WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene