WormBase Tree Display for Gene: WBGene00015689
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| WBGene00015689 | SMap | S_parent | Sequence | C10G11 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | spch-2 | Paper_evidence | WBPaper00038451 | |||||
| Person_evidence | WBPerson109 | ||||||||
| Sequence_name | C10G11.9 | ||||||||
| Molecular_name | C10G11.9 | ||||||||
| C10G11.9.1 | |||||||||
| CE08088 | |||||||||
| Other_name | CELE_C10G11.9 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | spch-2 | ||||||||
| DB_info | Database | AceView | gene | 1G850 | |||||
| WormQTL | gene | WBGene00015689 | |||||||
| WormFlux | gene | WBGene00015689 | |||||||
| NDB | locus_tag | CELE_C10G11.9 | |||||||
| NCBI | gene | 172325 | |||||||
| RefSeq | protein | NM_059411.5 | |||||||
| TrEMBL | UniProtAcc | P91026 | |||||||
| UniProt_GCRP | UniProtAcc | P91026 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:30:56 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 05 Nov 2014 11:16:03 | WBPerson2970 | Name_change | CGC_name | spch-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | spch | ||||||||
| Allele (19) | |||||||||
| Strain | WBStrain00037195 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00049809 | ||||||||
| 00049810 | |||||||||
| Ortholog | WBGene00039786 | Caenorhabditis briggsae | From_analysis | OMA | |||||
| WBGene00083498 | Caenorhabditis remanei | From_analysis | OMA | ||||||
| WBGene00143838 | Caenorhabditis brenneri | From_analysis | OMA | ||||||
| Paralog | WBGene00007307 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||||
| WBGene00020840 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | spch-2 encodes one of three C. elegans small, highly basic proteins that have similarity to mouse testis-specific histone H1, the human nucleotide-binding and splicing-associated protein SON, and the mollusk protamine-like SNBPs (sperm nuclear basic proteins); SPCH-2 associates specifically with spermatogenic meiotic and mature sperm chromatin. | Paper_evidence | WBPaper00028451 | |||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 12 Nov 2014 00:00:00 | ||||||||
| Automated_description | Part of chromatin. Expressed in sperm. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | C10G11.9 | |||||||
| Corresponding_transcript | C10G11.9.1 | ||||||||
| Other_sequence | CBC09724_1 | ||||||||
| FD516897.1 | |||||||||
| CSC01383_1 | |||||||||
| FD516842.1 | |||||||||
| Associated_feature | WBsf649226 | ||||||||
| WBsf716659 | |||||||||
| WBsf716926 | |||||||||
| WBsf983876 | |||||||||
| WBsf983877 | |||||||||
| WBsf983878 | |||||||||
| WBsf1009926 | |||||||||
| WBsf1009927 | |||||||||
| WBsf219569 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00022661 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00040317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00040316 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00028789 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00002935 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00004317 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr4212 | ||||||||
| Expr1144390 | |||||||||
| Expr2016022 | |||||||||
| Expr2034257 | |||||||||
| Drives_construct | WBCnstr00028650 | ||||||||
| Construct_product | WBCnstr00028650 | ||||||||
| Antibody | WBAntibody00001149 | ||||||||
| WBAntibody00001150 | |||||||||
| WBAntibody00001151 | |||||||||
| WBAntibody00001152 | |||||||||
| Microarray_results | SMD_C10G11.9 | ||||||||
| A_12_P151246 | |||||||||
| Aff_C10G11.9 | |||||||||
| GPL3518_CE08088 | |||||||||
| GPL8304_CE_WBGene00015689_A | |||||||||
| GPL8673_C10G11_9P00464 | |||||||||
| GPL8673_C10G11_9P00474 | |||||||||
| Expression_cluster (178) | |||||||||
| Interaction (182) | |||||||||
| Map_info | Map | I | Position | 0.896697 | |||||
| Positive | Positive_clone | C10G11 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00047279 | |||||||||
| WBPaper00055090 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
