WormBase Tree Display for Gene: WBGene00020840
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WBGene00020840 | SMap | S_parent | Sequence | T27A3 | ||
---|---|---|---|---|---|---|
Identity (6) | ||||||
Gene_info | Biotype | SO:0001217 | ||||
Gene_class | spch | |||||
Allele (20) | ||||||
RNASeq_FPKM (74) | ||||||
GO_annotation | 00051191 | |||||
00051192 | ||||||
Ortholog | WBGene00039786 | Caenorhabditis briggsae | From_analysis | OMA | ||
WBGene00143838 | Caenorhabditis brenneri | From_analysis | OMA | |||
chrI_pilon.g1067 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Paralog | WBGene00007307 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||
WBGene00015689 | Caenorhabditis elegans | From_analysis | WormBase-Compara | |||
Structured_description | Concise_description | spch-3 encodes one of three C. elegans small, highly basic proteins that have similarity to mouse testis-specific histone H1, the human nucleotide binding and splicing-associated protein SON, and the mollusk protamine-like SNBPs (sperm nuclear basic proteins); SPCH-3 associates specifically with spermatogenic meiotic and mature sperm chromatin. | Paper_evidence | WBPaper00028451 | ||
Curator_confirmed | WBPerson1843 | |||||
Date_last_updated | 12 Nov 2014 00:00:00 | |||||
Automated_description | Part of chromatin. Expressed in sperm. | Paper_evidence | WBPaper00065943 | |||
Curator_confirmed | WBPerson324 | |||||
WBPerson37462 | ||||||
Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | |||||
Date_last_updated | 29 Nov 2023 00:00:00 | |||||
Molecular_info | Corresponding_CDS | T27A3.4 | ||||
Corresponding_transcript | T27A3.4.1 | |||||
Other_sequence | CBC01763_1 | |||||
CR02215 | ||||||
CRC00384_1 | ||||||
Associated_feature | WBsf643330 | |||||
WBsf217749 | ||||||
Experimental_info | RNAi_result | WBRNAi00040317 | Inferred_automatically | RNAi_primary | ||
WBRNAi00040316 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00002935 | Inferred_automatically | RNAi_primary | ||||
WBRNAi00004317 | Inferred_automatically | RNAi_primary | ||||
Expr_pattern | Expr4212 | |||||
Expr1157809 | ||||||
Expr2016023 | ||||||
Expr2034258 | ||||||
Drives_construct | WBCnstr00024846 | |||||
Construct_product | WBCnstr00024846 | |||||
Antibody | WBAntibody00001149 | |||||
WBAntibody00001150 | ||||||
WBAntibody00001151 | ||||||
WBAntibody00001152 | ||||||
Microarray_results (19) | ||||||
Expression_cluster (245) | ||||||
Interaction (191) | ||||||
Map_info | Map | I | Position | 0.781796 | ||
Positive | Positive_clone | T27A3 | Inferred_automatically | From sequence, transcript, pseudogene data | ||
Pseudo_map_position | ||||||
Reference | WBPaper00038491 | |||||
WBPaper00047279 | ||||||
WBPaper00054442 | ||||||
WBPaper00055090 | ||||||
Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | ||||
Method | Gene |