WormBase Tree Display for Gene: WBGene00020578

WBGene00020578 SMap: S_parent: Sequence: T19D12
  Identity: Version: 2
    Name: Sequence_name: T19D12.3
      Molecular_name: T19D12.3
      Other_name: CELE_T19D12.3 Accession_evidence: NDB BX284602
      Public_name: T19D12.3
    DB_info: Database: AceView gene 2G951
        WormQTL gene WBGene00020578
        WormFlux gene WBGene00020578
        NDB locus_tag CELE_T19D12.3
        NCBI gene 188607
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:03 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 21 Nov 2019 15:09:06 WBPerson4025 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele: WBVar01499702
      WBVar01498435
      WBVar00739479
      WBVar00739480
      WBVar00739481
      WBVar00739482
      WBVar00368640
      WBVar00368641
    RNASeq_FPKM (74)
    Ortholog: WBGene00086947 Caenorhabditis briggsae From_analysis: Inparanoid_8
      WBGene00214436 Caenorhabditis japonica From_analysis: Inparanoid_8
    Paralog: WBGene00016004 Caenorhabditis elegans From_analysis: Panther
      WBGene00019273 Caenorhabditis elegans From_analysis: Panther
      WBGene00020576 Caenorhabditis elegans From_analysis: Panther
      WBGene00020577 Caenorhabditis elegans From_analysis: Panther
    Structured_description: Automated_description: Enriched in CEP socket cell; GABAergic neurons; excretory cell; and intestine based on tiling array; single-cell RNA-seq; and microarray studies. Is affected by several genes including daf-16; daf-2; and skn-1 based on microarray; RNA-seq; and tiling array studies. Is affected by seventeen chemicals including methylmercuric chloride; Mercuric Chloride; and Tunicamycin based on microarray and RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T19D12.3:wp274
    Corresponding_pseudogene: T19D12.3
    Associated_feature: WBsf221476
  Experimental_info: Expr_pattern: Expr1022815
      Expr1157099
      Expr2006259
      Expr2024477
    Drives_construct: WBCnstr00025036
    Construct_product: WBCnstr00025036
    Microarray_results (14)
    Expression_cluster: WBPaper00037950:excretory-cell_larva_enriched
      WBPaper00037950:excretory-cell_larva_SelectivelyEnriched
      WBPaper00037950:GABAergic-motor-neurons_larva_SelectivelyEnriched
      WBPaper00038168:lin-15B(n744)_downregulated
      WBPaper00038168:lin-15B(n744)_upregulated
      WBPaper00038237:age-1_upregulated_intestine_rescue
      WBPaper00038237:age-1_upregulated_neuron_rescue
      WBPaper00038237:age-1_upregulated_nontransgenic
      WBPaper00042194:nhr-114(RNAi)_downregulated
      WBPaper00042215:wdr-23(tm1817)_upregulated
      WBPaper00042477:rsr-2(RNAi)_upregulated_TilingArray
      WBPaper00044316:CH3HgCl_7.5uM_upregulated
      WBPaper00044316:HgCl2_20uM_upregulated
      WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
      WBPaper00045390:tunicamycin_upregulated
      WBPaper00048530:fshr-1(ok778)_PA14_upregulated
      WBPaper00048971:daf-16(mgDf50)_upregulated_L1
      WBPaper00049266:NaAsO2-Stress_regulated_N2
      WBPaper00050096:P.aeruginosa_upregulated
      WBPaper00050370:dpy-21(e428)_L3_downregulated
      WBPaper00050488:adult_vs_dauer_regulated_N2_20C
      WBPaper00050726:OsmoticStress_regulated_NoFood
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053402:his-3(RNAi)_downregulated
      WBPaper00054758:alg-1(gk204)_upregulated
      WBPaper00055354:Rifampicin-Allantoin_upregulated
      WBPaper00055386:daf-2(e1370)_upregulated
      WBPaper00055386:eat-2(ad465)_upregulated
      WBPaper00056161:hermaphrodite_enriched_siRNA
      WBPaper00056275:P.aeruginosa_upregulated
      WBPaper00056275:P.aeruginosa_upregulated_atf-7(qd22qd130)_dependent
      WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
      WBPaper00057041:spc-1(cas971)_downregulated
      WBPaper00057041:unc-70(cas983)_downregulated
      WBPaper00057068:Cadmium_upregulated
      WBPaper00058711:paraquat_downregulated
      WBPaper00058711:skn-1(lax188)_upregulated
      WBPaper00058948:PA14_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059754:P.aeruginosa_PA14_upregulated
      WBPaper00060399:CoCl2_6hr_upregulated_N2
      WBPaper00060399:pqm-1(ok485)_upregulated_CoCl2_6hr
      WBPaper00061340:CEPso
      WBPaper00061527:sdz-8-gst-31
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061753:csr-1(tor159)_upregulated_25C
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062345:bortezomib_4h_upregulated_N2
      WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
      WBPaper00064005:starvation_upregulated_N2_mRNA
      WBPaper00064871:P.fluorescens_upregulated_AWA
      WBPaper00064871:PA14_upregulated_AWA
      WBPaper00065975:P-body_vs_WholeAnimal_depleted
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066062:xrep-4(lax137)_upregulated
      cgc4489_group_9
      WBPaper00025141:N2_Expressed_Genes
      WBPaper00026952:class_E
      WBPaper00026980:intestine_enriched
      WBPaper00028789:PA14_vs_gacA_upregulated_4hr
      WBPaper00028789:PA14_vs_gacA_upregulated_8hr
      WBPaper00028789:PA14_vs_OP50_upregulated_4hr
      WBPaper00028789:PA14_vs_OP50_upregulated_8hr
      WBPaper00031003:0hr_muscle_depleted
      WBPaper00031003:total_muscle_depleted
      WBPaper00031184:acrylamide_upregulated
      WBPaper00032948:FedUp
      WBPaper00034757:up_by_oxidative_stress
      WBPaper00039866:ClassComp_daf-19_downregulated
      WBPaper00040821:Au-NP_regulated
      WBPaper00041939:control_vs_EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
      WBPaper00041939:control_vs_UVC-exposed_48h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_3h
      WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_3h
      WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
      WBPaper00043980:arsenic_upregulated
      WBPaper00045960:L1-L4-lethargus_upregulated
      WBPaper00045960:L4-lethargus_upregulated
      WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
      WBPaper00051448:P.aeruginosa_Slow-Killing_upregulated
      WBPaper00053236:Starvation_regulated_GR1307
      WBPaper00053550:daf-19(m86)_downregulated_3-fold-embryo
      WBPaper00055899:2,4-Dinitroanisole_regulated
      WBPaper00055899:nitroguanidine_regulated
      WBPaper00055899:nitrotriazolone_regulated
      [cgc6390]:Cluster_A
    Interaction: WBInteraction000190684
      WBInteraction000201863
      WBInteraction000229089
      WBInteraction000276851
      WBInteraction000281918
      WBInteraction000328600
      WBInteraction000335858
      WBInteraction000353261
      WBInteraction000399967
      WBInteraction000444853
  Map_info: Positive: Positive_clone: T19D12 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -0.0475057
  Method: Gene