WormBase Tree Display for Gene: WBGene00020309

WBGene00020309 SMap: S_parent: Sequence: T07D3
  Identity: Version: 2
    Name: Sequence_name: T07D3.6
      Molecular_name: T07D3.6
      Other_name: CELE_T07D3.6 Accession_evidence: NDB BX284602
      Public_name: T07D3.6
    DB_info: Database: AceView gene 2B169
        WormQTL gene WBGene00020309
        WormFlux gene WBGene00020309
        NDB locus_tag CELE_T07D3.6
        NCBI gene 188224
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:31:02 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 30 Oct 2015 16:51:57 WBPerson1983 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele (147)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00011554 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00017877 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020307 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020308 Caenorhabditis elegans From_analysis: TreeFam
      WBGene00020924 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00021249 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
    Structured_description: Automated_description: Is affected by several genes including eat-2; dpy-7; and aak-2 based on RNA-seq studies. Is affected by four chemicals including multi-walled carbon nanotube; stavudine; and Zidovudine based on RNA-seq studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: T07D3.6:wp112
      T07D3.6:wp225
      T07D3.6:wp251
    Corresponding_pseudogene: T07D3.6
    Associated_feature: WBsf657295
      WBsf986511
      WBsf986512
  Experimental_info: Expr_pattern: Expr1022168
      Expr1156363
    Microarray_results (20)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:AVA-neuron_L1-larva_expressed
      WBPaper00038438:D.coniospora_12hr_downregulated_RNAseq
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00048923:Aging_regulated
      WBPaper00049377:MWCNT_downregulated
      WBPaper00049545:cco-1(RNAi)_upregulated
      WBPaper00049545:jmjd-3.1(+)_upregulated
      WBPaper00049545:rgef-1p-jmjd-1.2(+)_upregulated
      WBPaper00050193:cec-4(ok3124)_upregulated_L1
      WBPaper00050193:dpy-27(RNAi)_upregulated_L1
      WBPaper00050370:dpy-21(e428)_L3_upregulated
      WBPaper00050412:cco-1(RNAi)_upregulated_N2
      WBPaper00050726:OsmoticStress_regulated_Food
      WBPaper00051558:aging_regulated
      WBPaper00053295:lin-22(ot269)_upregulated
      WBPaper00053302:stavudine_24h_regulated
      WBPaper00053302:zidovudine_72h_regulated
      WBPaper00053771:up_at_dpy-7(e88)
      WBPaper00053909:N2_vs_CB4856_upregulated
      WBPaper00055013:hmg-4(RNAi)_downregulated
      WBPaper00055013:spt-16(RNAi)_downregulated
      WBPaper00055354:eat-2(ad1116)_upregulated
      WBPaper00055941:atfs-1(et15)_upregulated
      WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
      WBPaper00056471:aak-1(tm1944);aak-2(ok524)_downregulated
      WBPaper00058598:mex-1(or286)_upregulated
      WBPaper00058598:mex-3(eu149)_upregulated
      WBPaper00058598:sin-3(tm1276)_downregulated
      WBPaper00058598:spn-4(tm291)_upregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00059328:mrps-5(RNAi)_downregulated_mRNA
      WBPaper00059378:cec-4(ok3124);lmn-1(Y59C)_vs_lmn-1(Y59C)_downregulated
      WBPaper00060014:set-2(tm1630)_downregulated
      WBPaper00060014:set-2(zr2012)_downregulated
      WBPaper00060764:swsn-1(os22ts)_upregulated
      WBPaper00060764:swsn-9(ok1354)_downregulated
      WBPaper00061203:sin-3(tm1276)_upregulated
      WBPaper00061203:spr-1(ok2144)_upregulated
      WBPaper00061341:28C_48h_downregulated
      WBPaper00061424:Diet_MYb120_upregulated
      WBPaper00061527:srj-21-srh-32
      WBPaper00062156:jmjd-5(zr1234)_upregulated
      WBPaper00062159:hda-2(ok1479)_upregulated
      WBPaper00062325:muscle_depleted_coding-RNA
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
      WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
      WBPaper00064637:cox-5B(RNAi)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00065096:25C_vs_20C_downregulated
      WBPaper00065993:glp-1(e2141)_upregulated
      WBPaper00066110:Cisplatin_upregulated_diploid
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      WBPaper00066146:germline-inx-14(RNAi)_upregulated_PA14
      WBPaper00039851:HK_C_albicans_vs_HK_OP50
      [cgc5767]:expression_class_M
      [cgc5767]:expression_class_SM
    Interaction: WBInteraction000455926
  Map_info: Positive: Positive_clone: T07D3 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -15.5898
  Reference: WBPaper00038491
    WBPaper00065080
  Method: Gene