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WormBase Tree Display for Gene: WBGene00020049

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Name Class

WBGene00020049SMapS_parentSequenceR13A5
IdentityVersion2
NameCGC_namettr-8
Sequence_nameR13A5.6
Molecular_nameR13A5.6
R13A5.6.1
CE01378
Other_nameCELE_R13A5.6Accession_evidenceNDBBX284603
Public_namettr-8
DB_infoDatabaseAceViewgene3I654
WormQTLgeneWBGene00020049
WormFluxgeneWBGene00020049
NDBlocus_tagCELE_R13A5.6
PanthergeneCAEEL|WormBase=WBGene00020049|UniProtKB=Q95Y93
familyPTHR21700
NCBIgene187856
RefSeqproteinNM_066256.2
TREEFAMTREEFAM_IDTF315773
TrEMBLUniProtAccQ95Y93
UniProt_GCRPUniProtAccQ95Y93
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:31:02WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
220 Sep 2007 11:48:01WBPerson2970Name_changeCGC_namettr-8
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classttr
Allele (12)
StrainWBStrain00002546
WBStrain00002210
RNASeq_FPKM (74)
GO_annotation00089798
00124774
Ortholog (29)
Paralog (62)
Structured_descriptionConcise_descriptionR13A5.6 encodes a protein containing a predicted signal sequence followed by a transthyretin-like domain; the product of R13A5.6 belongs to a family of apparently nematode-specific proteins whose function is not yet known; an R13A5.6::GFP promoter fusion directs expression outside of the nervous system.Paper_evidenceWBPaper00002969
WBPaper00028592
Curator_confirmedWBPerson1843
Date_last_updated04 Sep 2007 00:00:00
Automated_descriptionPredicted to be located in cell surface and extracellular region.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSR13A5.6
Corresponding_transcriptR13A5.6.1
Other_sequence (119)
Associated_featureWBsf227000
Experimental_infoRNAi_resultWBRNAi00051893Inferred_automaticallyRNAi_primary
WBRNAi00017820Inferred_automaticallyRNAi_primary
WBRNAi00034918Inferred_automaticallyRNAi_primary
WBRNAi00006730Inferred_automaticallyRNAi_primary
Expr_patternChronogram1168
Expr4313
Expr6521
Expr6522
Expr1017010
Expr1155549
Drives_constructWBCnstr00002952
WBCnstr00004469
WBCnstr00011912
WBCnstr00025402
Construct_productWBCnstr00025402
Microarray_resultsSMD_R13A5.6
176118_at
A_12_P108079
Aff_R13A5.6
GPL13394_WBGene00020049
GPL13914_R13A5.6
GPL14144_R13A5.6_282-341_0.702_49_A
GPL14144_R13A5.6_346-405_0.953_1_C
GPL14144_R13A5.6_41-100_0.890_11_B
GPL19516_CGZ0032131
GPL21109_R13A5.6
GPL3518_CE01378
GPL8304_CE_WBGene00020049_A
GPL8673_R13A5_6P00041
GPL8673_R13A5_6P00167
GPL8673_R13A5_6P00353
GPL9450_R13A5.6
cea2.p.70977
Expression_clusterWBPaper00024375:Up_vhl-1_vs_hif-1_vhl-1
WBPaper00029359_1280
WBPaper00029359_1444
WBPaper00029359_1504
WBPaper00029359_1578
WBPaper00029359_1604
WBPaper00031040:TGF-beta_adult_upregulated
WBPaper00032031:DConiospora_upregulated_OligoArray_24h
WBPaper00032425:down_in_alg-1
WBPaper00032425:down_in_zfp-1
WBPaper00033065:cyc-1(RNAi)_upregulated
WBPaper00033131:dapk-1_upregulated
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_larva_enriched
WBPaper00038438:D.coniospora_12hr_upregulated_RNAseq
WBPaper00038438:Harposporium_24hr_upregulated_RNAseq
WBPaper00038438:S.marcescens_24hr_downregulated_TilingArray
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040412:germline-regulated_daf-12_target
WBPaper00040560:hpl-2_L3_downregulated
WBPaper00044037:eat-2_regulated_nhr-62_dependent
WBPaper00044037:eat-2_upregulated
WBPaper00044426:rotenone_24h_upregulated
WBPaper00044578:reduced-humidity_downregulated_microarray
WBPaper00044736:oscillating_dev_expression
WBPaper00044786:emr-1(RNAi);lem-2(tm1582)_upregulated
WBPaper00045017:blmp-1(tm548)_upregulated
WBPaper00045316:prg-1_downregulated_L2
WBPaper00045316:prg-1_downregulated_L3
WBPaper00045390:ubc-9(RNAi)_upregulated
WBPaper00045420:fertilization_downregulated_transcript
WBPaper00045774:clk-1_upregulated
WBPaper00045934:wrn-1(gk99)_upregulated
WBPaper00046012:tdp-1(ok803)_upregulated
WBPaper00046497:B.thuringiensis_upregulated_protein
WBPaper00046795:starvation_upregulated
WBPaper00047131:daf-2(e1370)_upregulated_N2-background
WBPaper00048988:neuron_expressed
WBPaper00049018:ham-3(RNAi)_downregulated
WBPaper00049920:Glucose-Diet_upregulated_N2
WBPaper00049942:hsf-1(RNAi)_downregulated
WBPaper00050080:rbr-2(tm3141)_downregulated
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:20C_vs_25C_regulated_mir-34(gk437)_adult
WBPaper00050488:20C_vs_25C_regulated_mir-34(OverExpression)_adult
WBPaper00050488:20C_vs_25C_regulated_N2_adult
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:OsmoticStress_regulated_Food
WBPaper00050801:DAF-12_dauer_regulome
WBPaper00050801:DAF-16_dauer_regulome
WBPaper00050903:mir-35-41(nDf50)_20C_upregulated
WBPaper00050903:mir-35-41(nDf50)_25C_upregulated
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00051404:alg-1(gk214)_upregulated
WBPaper00051404:alg-2(ok304)_upregulated
WBPaper00053140:IncreasingResponse_20nmAgCit
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053302:alovudine_24h_regulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053302:zidovudine_72h_regulated
WBPaper00053388:dauer_regulated_Cluster4
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053713:Starvation-induced_postdauer_vs_control_upregulated
WBPaper00053771:up_at_dpy-7(e88)
WBPaper00054410:set-9(rw5)_upregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054872:egl-9(sa307)_upregulated
WBPaper00055013:hmg-4(RNAi)_upregulated
WBPaper00055013:spt-16(RNAi)_upregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:Psora-Allantoin_downregulated
WBPaper00055354:Psora_downregulated
WBPaper00055354:Rapamycin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Metformin_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_downregulated
WBPaper00055354:Rapamycin-Rifampicin_downregulated
WBPaper00055354:Rapamycin_downregulated
WBPaper00055354:Rifampicin-Allantoin_downregulated
WBPaper00055354:Rifampicin_downregulated
WBPaper00055386:daf-2(e1370)_upregulated
WBPaper00055827:daf-2(e1370)_upregulated
WBPaper00055862:antimycin_damt-1(gk961032)_regulated
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056034:pals-22(jy3)_upregulated
WBPaper00056169:rrf-3(pk1426)_upregulated_embryo
WBPaper00056275:P.aeruginosa_upregulated
WBPaper00056275:P.aeruginosa_upregulated_pmk-1(km25)_dependent
WBPaper00056284:ints-5(RNAi)_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:aak-1(tm1944);aak-2(ok524)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056617:adr-1_upregulated_embryo_transcript
WBPaper00057068:ints-4(RNAi)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058725:sftb-1(cer6)_downregulated
WBPaper00058927:high-redox-state_downregulated
WBPaper00059191:hsp-16.2p-LIN-29_downregulated
WBPaper00059328:mrps-5(RNAi)_upregulated_mRNA
WBPaper00059328:mrps-5(RNAi)_upregulated_protein
WBPaper00059421:daf-1(m40);daf-3(mgDf90)_upregulated
WBPaper00059537:ngn-1(ok2200)_upregulated
WBPaper00059566:wdr-23(mac32)_upregulated
WBPaper00059567:olrn-1(ums9)_regulated
WBPaper00059664:srbc-48(ac23)_upregulated
WBPaper00059739:hira-1(gk835598)_upregulated_L4
WBPaper00059895:wounding_upregulated
WBPaper00059987:Wounding_upregulated
WBPaper00060014:set-2(tm1630)_downregulated
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060661:sensory-neuron_enriched
WBPaper00060703:nas-38(ok3407)_upregulated
WBPaper00060811:L1_vs_adult_downregulated_neural
WBPaper00060909:atfs-1(cmh15)_downregulated
WBPaper00061007:S.aquatilis_upregulated
WBPaper00061274:microgravity_downregulated
WBPaper00061341:28C_24h_upregulated
WBPaper00061390:daf-22(ok693)_ascarosides_downregulated
WBPaper00061405:S.aureus_downregulated_starvation
WBPaper00061527:ttr-18-C54D10.3
WBPaper00061530:nhr-49(e2144)_upregulated
WBPaper00061653:alh-4(hj221)_downregulated
WBPaper00061823:mex-3(spr9)_downregulated
WBPaper00061902:camt-1(ok515)_regulated_RMG
WBPaper00061902:camt-1(ok515)_regulated_URX-AQR-PQR
WBPaper00062056:lin-15B(n744)_downregulated
WBPaper00062118:neural-HSF-1_upregulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062167:mbl-1(tm1563)_upregulated
WBPaper00062325:muscle_depleted_coding-RNA
WBPaper00062347:blmp-1(tm548)_upregulated
WBPaper00062354:H.zoospora_6h_regulated
WBPaper00062590:Aging_downregulated_hypodermis
WBPaper00062590:Aging_downregulated_neuron
WBPaper00062669:extracellular-vesicle_protein
WBPaper00064005:starvation_downregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-1-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064130:Beta-Amyloid_downregulated_protein
WBPaper00064306:Agaro-oligosaccharides_upregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064727:daf-2(e1370)_upregulated
WBPaper00064871:PA14_upregulated_AWA
WBPaper00065043:dcap-1(tm3163)_upregulated
WBPaper00065096:Day10_vs_Day1_downregulated
WBPaper00065096:npr-8(ok1439)_upregulated_Day1_20C
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065835:Day11_vs_Day1_downregulated
WBPaper00065835:mtH2S-AP39-D0-treatment_upregulated_Day11
WBPaper00065841:2_0
WBPaper00065841:11_1
WBPaper00065926:pgph-2(overepxreesion)_upregulated_glucose
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_transcript
WBPaper00065975:P-body_vs_WholeAnimal_depleted
WBPaper00065993:glp-1(e2141)_upregulated
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066110:Doxorubicin_upregulated_diploid
WBPaper00066110:tetraploid_vs_diploid_upregulated
cgc4386_cluster_2_6
cgc4489_group_9
WBPaper00026929:Resveratrol_regulated_daf-16
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00029437:dcr-1_upregulated
WBPaper00030985:Photorhabdus_luminescens_downregulated
WBPaper00031003:hlh_1_enriched
WBPaper00031532:Larva_Pan_Neuronal_Depleted
WBPaper00035873:dpy-9_regulated
WBPaper00035873:dpy-10_regulated
WBPaper00035873:osm-7_regulated
WBPaper00035873:osm-8_regulated
WBPaper00036123:Atrazine_regulated
WBPaper00036130:mir-243_up_regulated
WBPaper00036286:Pattern_C
WBPaper00038172:crh-1null_up_regulated
WBPaper00038172:tax-6null_up_regulated
WBPaper00040184:hcf-1nc_sir-2.1nc_daf-2up
WBPaper00040823:alg-1(gk214)_upregulated
WBPaper00041906:I-3690_vs_OP50_3d
WBPaper00042258:DA1877_upregulated_GravidAdult
WBPaper00042274:tbx-2(bx59)_upregulated
WBPaper00044535:male_upregulated
WBPaper00045263:0.1mM-paraquat_downregulated
WBPaper00045263:isp-1(qm150)_downregulated
WBPaper00045263:nuo-6(qm200)_downregulated
WBPaper00045263:ProLongevity-mtROS_downregulated
WBPaper00046548:dafachronic-acid_downregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00047070:N2_UV_upregulated
WBPaper00047070:xpa-1_UV_upregulated
WBPaper00057098:SiO2-nanoparticles_downregulated
[cgc6390]:Cluster_A
InteractionWBInteraction000276290
WBInteraction000346034
Map_infoMapIIIPosition-0.667512Error0.000354
PositivePositive_cloneR13A5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00002969
WBPaper00028592
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene