WormBase Tree Display for Gene: WBGene00019327
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| WBGene00019327 | SMap | S_parent | Sequence | K02F3 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zip-2 | Person_evidence | WBPerson1997 | |||||
| WBPerson460 | |||||||||
| Sequence_name | K02F3.4 | ||||||||
| Molecular_name | K02F3.4 | ||||||||
| K02F3.4.1 | |||||||||
| CE23848 | |||||||||
| K02F3.4.2 | |||||||||
| K02F3.4.3 | |||||||||
| Other_name | CELE_K02F3.4 | Accession_evidence | NDB | BX284603 | |||||
| Public_name | zip-2 | ||||||||
| DB_info | Database | AceView | gene | 3B453 | |||||
| WormQTL | gene | WBGene00019327 | |||||||
| WormFlux | gene | WBGene00019327 | |||||||
| NDB | locus_tag | CELE_K02F3.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00019327|UniProtKB=Q21148 | |||||||
| family | PTHR23334 | ||||||||
| NCBI | gene | 175240 | |||||||
| RefSeq | protein | NM_001384015.2 | |||||||
| SwissProt | UniProtAcc | Q21148 | |||||||
| TREEFAM | TREEFAM_ID | TF317134 | |||||||
| UniProt_GCRP | UniProtAcc | Q21148 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:01 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | zip-2 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zip | ||||||||
| Allele (51) | |||||||||
| Strain | WBStrain00037649 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (25) | |||||||||
| Ortholog (23) | |||||||||
| Paralog | WBGene00016754 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00016997 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| WBGene00017755 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00021552 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | zip-2 encodes a bZIP transcription factor; ZIP-2 activity is required for regulating one branch of the immune response pathway that responds to infection by virulent strains of the bacterial pathogen Pseudomonas aeruginosa; specifically, ZIP-2 is required for inducing expression of a subset of infection response genes, including irg-1 and irg-2, and for full resistance to P. aeruginosa infection. | Paper_evidence | WBPaper00027309 | |||||
| WBPaper00035891 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 08 Feb 2010 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in defense response to bacterium and positive regulation of macromolecule biosynthetic process. Predicted to be located in nucleus. Expressed in pharynx. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Modifies_disease | DOID:14330 | ||||||||
| Modifies_disease_in_annotation | WBDOannot00000499 | ||||||||
| Molecular_info | Corresponding_CDS | K02F3.4 | |||||||
| Corresponding_transcript | K02F3.4.1 | ||||||||
| K02F3.4.2 | |||||||||
| K02F3.4.3 | |||||||||
| Other_sequence (25) | |||||||||
| Associated_feature (16) | |||||||||
| Gene_product_binds (249) | |||||||||
| Transcription_factor | WBTranscriptionFactor000223 | ||||||||
| Experimental_info | RNAi_result (25) | ||||||||
| Expr_pattern | Expr7776 | ||||||||
| Expr10045 | |||||||||
| Expr1020648 | |||||||||
| Expr1038353 | |||||||||
| Expr1153467 | |||||||||
| Expr2018156 | |||||||||
| Expr2036293 | |||||||||
| Drives_construct | WBCnstr00012921 | ||||||||
| WBCnstr00015019 | |||||||||
| WBCnstr00015163 | |||||||||
| WBCnstr00019915 | |||||||||
| WBCnstr00022575 | |||||||||
| WBCnstr00025914 | |||||||||
| Construct_product | WBCnstr00016820 | ||||||||
| WBCnstr00018893 | |||||||||
| WBCnstr00018894 | |||||||||
| WBCnstr00019915 | |||||||||
| WBCnstr00022575 | |||||||||
| WBCnstr00025914 | |||||||||
| Regulate_expr_cluster | WBPaper00035891:PA_induced_zip-2_dependent | ||||||||
| WBPaper00035891:zip-2(RNAi)_downregulated | |||||||||
| WBPaper00035891:zip-2(RNAi)_upregulated | |||||||||
| WBPaper00053605:zip-2(RNAi)_downregulated | |||||||||
| WBPaper00053605:zip-2(RNAi)_upregulated | |||||||||
| Microarray_results (21) | |||||||||
| Expression_cluster (221) | |||||||||
| Interaction (49) | |||||||||
| WBProcess | WBbiopr:00000008 | ||||||||
| WBbiopr:00000039 | |||||||||
| Map_info | Map | III | Position | -25.7689 | |||||
| Positive | Positive_clone | K02F3 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (32) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| [200811 gw3] Modified Map position as it was a reverse physical that could not be fixed by automated methods. (-25.7711) | |||||||||
| Method | Gene |
