WormBase Tree Display for Gene: WBGene00021552
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| WBGene00021552 | SMap | S_parent | Sequence | Y44E3B | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | zip-4 | Person_evidence | WBPerson1997 | |||||
| WBPerson460 | |||||||||
| Sequence_name | Y44E3B.1 | ||||||||
| Molecular_name (11) | |||||||||
| Other_name | CELE_Y44E3B.1 | Accession_evidence | NDB | BX284601 | |||||
| Public_name | zip-4 | ||||||||
| DB_info | Database | AceView | gene | 1D834 | |||||
| WormQTL | gene | WBGene00021552 | |||||||
| WormFlux | gene | WBGene00021552 | |||||||
| NDB | locus_tag | CELE_Y44E3B.1 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00021552|UniProtKB=H2L0N3 | |||||||
| family | PTHR23334 | ||||||||
| NCBI | gene | 171900 | |||||||
| RefSeq | protein | NM_001047238.7 | |||||||
| NM_058732.5 | |||||||||
| NM_001381600.2 | |||||||||
| SwissProt | UniProtAcc | H2L0N3 | |||||||
| TREEFAM | TREEFAM_ID | TF317778 | |||||||
| UniProt_GCRP | UniProtAcc | H2L0N3 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 28 May 2004 13:31:04 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of stlace from WS125 | ||
| 2 | 18 Jul 2005 13:34:00 | WBPerson2970 | Name_change | CGC_name | zip-4 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | zip | ||||||||
| Allele (54) | |||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation | 00023210 | ||||||||
| 00023211 | |||||||||
| 00023212 | |||||||||
| 00023213 | |||||||||
| 00023214 | |||||||||
| 00023215 | |||||||||
| 00023216 | |||||||||
| 00023217 | |||||||||
| 00125880 | |||||||||
| 00125881 | |||||||||
| Ortholog (18) | |||||||||
| Paralog | WBGene00016754 | Caenorhabditis elegans | From_analysis | Panther | |||||
| WBGene00016997 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00017755 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WBGene00019327 | Caenorhabditis elegans | From_analysis | Panther | ||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | zip-4 encodes, by alternative splicing, two isoforms of a putative C/EBP protein, divergently orthologous to human human CEBPA (OMIM:116897, mutated in acute myeloid leukemia), CEBPB (OMIM:189965), CEBPD (OMIM:116898), CEBPE (OMIM:600749, mutated in specific granule deficiency), and CEBPG (OMIM:138972); ZIP-4 is paralogous to CEBP-1; ZIP-4 is weakly expressed in what may be a ubiquitous, constitutive pattern, with higher expression in pharynx, vulva and spermatheca, and somewhat higher expression in the rest of the somatic gonad; ZIP-4 has no obvious function in mass RNAi assays. | Paper_evidence | WBPaper00027309 | |||||
| WBPaper00029055 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 27 Mar 2008 00:00:00 | ||||||||
| Automated_description | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Involved in defense response to Gram-negative bacterium. Predicted to be located in nucleus. Expressed in gonad; pharynx; spermatheca; and vulva. | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | Y44E3B.1a | |||||||
| Y44E3B.1b | |||||||||
| Y44E3B.1c | |||||||||
| Corresponding_transcript | Y44E3B.1a.1 | ||||||||
| Y44E3B.1a.2 | |||||||||
| Y44E3B.1b.1 | |||||||||
| Y44E3B.1b.2 | |||||||||
| Y44E3B.1c.1 | |||||||||
| Other_sequence (16) | |||||||||
| Associated_feature | WBsf649017 | ||||||||
| WBsf649018 | |||||||||
| WBsf649019 | |||||||||
| WBsf976653 | |||||||||
| WBsf976654 | |||||||||
| WBsf978452 | |||||||||
| WBsf983097 | |||||||||
| WBsf219116 | |||||||||
| WBsf219117 | |||||||||
| Transcription_factor | WBTranscriptionFactor000863 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00056561 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00004619 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr7715 | ||||||||
| Expr1024700 | |||||||||
| Expr1039431 | |||||||||
| Expr1160034 | |||||||||
| Expr2018158 | |||||||||
| Expr2036295 | |||||||||
| Drives_construct | WBCnstr00012860 | ||||||||
| WBCnstr00024505 | |||||||||
| Construct_product | WBCnstr00021813 | ||||||||
| WBCnstr00024505 | |||||||||
| Microarray_results (38) | |||||||||
| Expression_cluster (123) | |||||||||
| Interaction (18) | |||||||||
| Map_info | Map | I | Position | -4.16186 | Error | 0.030517 | |||
| Positive | Positive_clone | Y44E3B | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 5317 | |||||||
| Pseudo_map_position | |||||||||
| Reference | WBPaper00038491 | ||||||||
| WBPaper00051448 | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
