WormBase Tree Display for Gene: WBGene00017877

WBGene00017877 SMap: S_parent: Sequence: F28A10
  Identity: Version: 2
    Name: Sequence_name: F28A10.9
      Molecular_name: F28A10.9
      Other_name: CELE_F28A10.9 Accession_evidence: NDB BX284602
      Public_name: F28A10.9
    DB_info: Database: AceView gene 2B118
        WormQTL gene WBGene00017877
        WormFlux gene WBGene00017877
        NDB locus_tag CELE_F28A10.9
        NCBI gene 185034
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:59 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 30 Oct 2015 16:51:06 WBPerson1983 Event: Changed_class: CDS Pseudogene
    Status: Live
  Gene_info: Biotype: SO:0000336
    Allele (39)
    RNASeq_FPKM (74)
    Ortholog (13)
    Paralog: WBGene00011554 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020307 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020924 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020309 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00021249 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
      WBGene00020308 Caenorhabditis elegans From_analysis: TreeFam
    Structured_description: Automated_description: Is affected by several genes including lin-4; eat-2; and lin-14 based on RNA-seq and microarray studies. Is affected by six chemicals including glycine; Doxycycline; and paraquat based on RNA-seq and microarray studies. Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS_history: F28A10.9:wp147
      F28A10.9:wp251
    Corresponding_pseudogene: F28A10.9
    Other_sequence: Name_isotig08013
    Associated_feature: WBsf665340
      WBsf986496
      WBsf1011443
  Experimental_info: Expr_pattern: Expr1012588
      Expr1149681
    Microarray_results (14)
    Expression_cluster: WBPaper00037950:A-class-motor-neurons_L1-larva_expressed
      WBPaper00037950:A-class-motor-neurons_L2-larva_expressed
      WBPaper00037950:all-neurons_L1-larva_expressed
      WBPaper00037950:all-neurons_L2-larva_expressed
      WBPaper00037950:AVE-neuron_L1-larva_expressed
      WBPaper00037950:bodywall-muscle_L1-larva_expressed
      WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
      WBPaper00037950:coelomocytes_L1-larva_expressed
      WBPaper00037950:coelomocytes_L2-larva_expressed
      WBPaper00037950:dopaminergic-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L1-larva_expressed
      WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
      WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
      WBPaper00037950:hypodermis_L1-larva_expressed
      WBPaper00037950:intestine_L1-larva_expressed
      WBPaper00037950:intestine_L2-larva_expressed
      WBPaper00037950:pharyngeal-muscle_L1-larva_expressed
      WBPaper00045420:fertilization_downregulated_transcript
      WBPaper00045521:Spermatogenic
      WBPaper00053308:SMG-2_associated_NMD(-)_unaltered_ClassII
      WBPaper00053599:female_vs_male_downregulated
      WBPaper00054493:hpl-2(tm1489)_upregulated
      WBPaper00055013:hmg-3(bar24)_downregulated
      WBPaper00056161:male_enriched_siRNA
      WBPaper00056330:glycine_downregulated
      WBPaper00059117:B.subtilis_upregulated
      WBPaper00061527:srj-42-srw-113
      WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
      WBPaper00061613:human-amyloid-beta_upregulated
      WBPaper00061653:alh-4(hj221)_downregulated
      WBPaper00062456:doxycycline_upregulated_N2_transcript
      WBPaper00062585:hlh-26(ok1453)_upregulated_E.faecium
      WBPaper00062672:let-418(n3536)dcp-66(RNAi)_upregulated
      WBPaper00064661:lpd-3(ok2138)_upregulated
      WBPaper00064716:paraquat_downregulated
      WBPaper00065096:Day10_vs_Day1_downregulated
      WBPaper00065096:npr-8(ok1439)_downregulated_Day1_20C
      WBPaper00066038:mip-1(how5)_upregulated
      WBPaper00066110:tetraploid_vs_diploid_upregulated
      cgc4489_group_15
      WBPaper00026929:Resveratrol_regulated_daf-16
      WBPaper00026929:sir-2.1_overexpression_regulated
      WBPaper00026952:class_B
      WBPaper00036286:Pattern_G
      WBPaper00041939:control_vs_UVC-EtBr-exposed_3h
      WBPaper00045294:0.1uM_TBBP_upregulated
      WBPaper00046853:AOBr_M.aeruginosa-batch-culture_downregulated
      WBPaper00048989:eat-2(ad465)_upregulated_in-DMSO
    Interaction (21)
  Map_info: Positive: Positive_clone: F28A10 Inferred_automatically: From sequence, transcript, pseudogene data
    Interpolated_map_position: II -15.5909
  Reference: WBPaper00038491
    WBPaper00065080
  Method: Gene