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WormBase Tree Display for Gene: WBGene00017422

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Name Class

WBGene00017422SMapS_parentSequenceF13C5
Identity (6)
Gene_infoBiotypeSO:0001217
Allele (46)
RNASeq_FPKM (74)
Ortholog (20)
Structured_descriptionConcise_descriptionF13C5.1 encodes a novel protein with two predicted transmembrane domains; the protein product of F13C5.1 is most closely related to proteins from other nematode species and does not appear to have close homologs in more distantly related organisms.Curator_confirmedWBPerson1843
Date_last_updated31 Oct 2008 00:00:00
Automated_descriptionEnriched in head mesodermal cell; neurons; and retrovesicular ganglion based on microarray; tiling array; RNA-seq; and single-cell RNA-seq studies. Is affected by several genes including daf-2; skn-1; and eat-2 based on RNA-seq and microarray studies. Is affected by fifteen chemicals including methylmercuric chloride; 4-bromodiphenyl ether; and stavudine based on microarray and RNA-seq studies.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSF13C5.1
Corresponding_CDS_historyF13C5.1:wp226
Corresponding_transcriptF13C5.1.1
F13C5.1.2
Other_sequenceCJC10730_1
EX914778.1
HBC15058_1
CJC10728_1
CRC03578_1
Oden_isotig27903
CR01283
Tcol_isotig17126
Associated_featureWBsf647790
WBsf662420
WBsf662421
WBsf716843
WBsf1003816
WBsf1003817
WBsf1003818
WBsf1022149
Experimental_infoRNAi_resultWBRNAi00082435Inferred_automaticallyRNAi_primary
WBRNAi00013202Inferred_automaticallyRNAi_primary
WBRNAi00102786Inferred_automaticallyRNAi_primary
WBRNAi00052134Inferred_automaticallyRNAi_primary
WBRNAi00082699Inferred_automaticallyRNAi_primary
WBRNAi00000673Inferred_automaticallyRNAi_primary
Expr_patternExpr1017807
Expr1037492
Expr1148439
Expr2002501
Expr2020719
Microarray_results (21)
Expression_clusterWBPaper00024970:GABAergic_neuron_specific
WBPaper00032976:dosage_compensated_genes
WBPaper00037946:LIN-39_interacting
WBPaper00037950:A-class-motor-neurons_CoreEnriched
WBPaper00037950:A-class-motor-neurons_embryo_enriched
WBPaper00037950:A-class-motor-neurons_larva_enriched
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:dopaminergic-neurons_larva_enriched
WBPaper00038168:lin-15B(n744)_upregulated
WBPaper00042194:nhr-114(RNAi)_downregulated
WBPaper00042215:wdr-23(tm1817)_upregulated
WBPaper00044316:CH3HgCl_7.5uM_upregulated
WBPaper00045050:csr-1(hypomorph)_upregulated
WBPaper00045257:bar-1(ga80)_upregulated
WBPaper00045314:S.aureus-induced_N2
WBPaper00045316:prg-1_upregulated_L4
WBPaper00045774:clk-1_upregulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_upregulated
WBPaper00049942:HeatShock_downregulated_hsf-1(+)
WBPaper00050163:chd-3(eh4)_upregulated_24-cell-embryo
WBPaper00050344:AFD-neuron_enriched
WBPaper00050344:ASER-neuron_enriched
WBPaper00050370:dpy-21(e428)_L3_upregulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:daf-2(e1370)_vs_daf-2(e1370);mir-34(gk437)_regulated_dauer_25C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(gk437)_regulated_dauer_20C
WBPaper00050488:N2_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050726:starvation_regulated_LowSalt
WBPaper00050859:upregulated_P-granule(-)GFP(+)_vs_control_day2-adult
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00051021:4-bromodiphenyl-ether_upregulated
WBPaper00051137:Orsay-virus_upregulated_rde-1(ne219)
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053302:stavudine_24h_regulated
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053402:cco-1(RNAi)_upregulated
WBPaper00053599:female_vs_male_upregulated
WBPaper00053599:mitosis_vs_meiosis_downregulated
WBPaper00053599:oocyte_vs_mitosis_downregulated
WBPaper00054493:hpl-2(tm1489)_downregulated
WBPaper00054758:alg-1(gk204)_upregulated
WBPaper00055060:flr-1(RNAi)_upregulated
WBPaper00055354:eat-2(ad1116)_upregulated
WBPaper00055354:Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Metformin_upregulated
WBPaper00055354:Rapamycin-Psora-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Allantoin_upregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rapamycin-Rifampicin_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055354:Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin_upregulated
WBPaper00055386:daf-2(e1370)_downregulated
WBPaper00055897:heat-shock_downregulated
WBPaper00056090:E.faecalis_upregulated_hpx-2(dg047)
WBPaper00056161:hermaphrodite_enriched_siRNA
WBPaper00056290:hsp-6(mg585)_upregulated
WBPaper00056293:rpl-5(0)-rpl-33(0)_upregulated
WBPaper00056443:DietaryRestriction_upregulated
WBPaper00056443:sek-1(km4)_upregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056809:smn-1(ok355)_upregulated
WBPaper00056826:hmc_biased
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00057161:meg-3(tm4259)_meg-4(ax2026)_downregulated_endo-siRNA_targets
WBPaper00057288:iff-1(RNAi)_downregulated_transcript
WBPaper00058691:cfp-1(tm6369)_upregulated
WBPaper00058691:sin-3(tm1276)_upregulated
WBPaper00058711:skn-1(lax188)_upregulated
WBPaper00058725:sftb-1(cer6)_upregulated
WBPaper00058948:PA14_downregulated
WBPaper00059027:neuron-synapses_depleted
WBPaper00059356:BAZ-2_SET-6_interacting
WBPaper00059471:EGL-43_interacting
WBPaper00059605:simr-1(cmp36)_upregulated
WBPaper00059728:5ug_cholesterol_downregulated
WBPaper00059728:20ug_cholesterol_downregulated
WBPaper00059763:neuron_expressed
WBPaper00060084:cco-1(RNAi)_upregulated_N2
WBPaper00060358:B.thuringiensis_non-pathogen_regulated_elt-2(RNAi)
WBPaper00060358:B.thuringiensis_pathogen_regulated_elt-2(RNAi)
WBPaper00060459:bcat-1(RNAi)_upregulated
WBPaper00060526:plp-1(ok2155)_downregulated
WBPaper00060661:sensory-neuron_enriched
WBPaper00060764:swsn-1(os22ts)_downregulated
WBPaper00060811:L1_vs_adult_upregulated_neural
WBPaper00060909:atfs-1(et18)_upregulated
WBPaper00061007:S.aquatilis_downregulated
WBPaper00061340:AIZ
WBPaper00061340:DVC
WBPaper00061340:PVT
WBPaper00061341:28C_48h_downregulated
WBPaper00061405:S.aureus_upregulated_starvation
WBPaper00061439:unc-30(ok613)_downregulated
WBPaper00061439:unc-30(ok613)_downregulated_P.aeruginosa-infection
WBPaper00061479:hda-1(ne4748)_upregulated
WBPaper00061527:B0511.6_180-Y54E10BR.4_1509
WBPaper00061527:ldb-1_2877-scd-1_3086
WBPaper00061613:human-amyloid-beta_alpha-Synuclein(A53T)_upregulated
WBPaper00061613:human-amyloid-beta_upregulated
WBPaper00061753:csr-1(tor159)_upregulated_25C
WBPaper00062103:neuron_enriched
WBPaper00062146:MOG-7-degron_2h_regulated
WBPaper00062159:hda-2(ok1479)_upregulated
WBPaper00062345:bortezomib_4h_upregulated_N2
WBPaper00062440:crh-1(n3315)_downregulated
WBPaper00062440:crh-1(syb385)_downregulated
WBPaper00062456:doxycycline_downregulated_CB4856_transcript
WBPaper00062456:doxycycline_downregulated_N2_transcript
WBPaper00062497:xpf-1(tm2842)_upregulated
WBPaper00062587:lsl-1(ljm1)_downregulated
WBPaper00062587:lsl-1(tm4769)_downregulated
WBPaper00062590:Aging_upregulated_coelomocyte
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064088:Day-1-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064088:Day-1-adult_vs_L4_downregulated_glp-1(e2141)
WBPaper00064088:Day-3-adult_vs_L4_downregulated_fem-3(q20)
WBPaper00064107:lin-35(n745)_upregulated
WBPaper00064315:mes-4(bn73)_upregulated_EGCs
WBPaper00064509:static-magnetic-field_downregulated
WBPaper00064539:nhr-114(gk849)_upregulated
WBPaper00064632:daf-2(e1370)_downregulated_intestine
WBPaper00064661:lpd-3(ok2138)_upregulated
WBPaper00064716:paraquat_upregulated
WBPaper00064769:him-17(me24)_downregulated
WBPaper00064871:hypoxia_downregulated_F1
WBPaper00065086:JU1400_N.ferruginous_regulated
WBPaper00065086:JU1400_N.ironsii_regulated
WBPaper00065086:JU1400_N.parisii_regulated
WBPaper00065096:25C_vs_20C_upregulated
WBPaper00065096:Day10_vs_Day1_upregulated
WBPaper00065835:Day5_vs_Day1_downregulated
WBPaper00065993:glp-1(e2141)_downregulated
WBPaper00065995:M.humicola-extract_downregulated_N2
WBPaper00066062:xrep-4(lax137)_upregulated
WBPaper00066085:sin-3(tm1276)_upregulated
WBPaper00066146:germline-inx-14(RNAi)_downregulated_PA14
WBPaper00066232:ash-2(RNAi)_downregulated_WT
WBPaper00025141:N2_Expressed_Genes
WBPaper00025141:unc-4::GFP_Enriched_Genes
WBPaper00025141:unc-4::GFP_Expressed_Genes
WBPaper00030839:Embryo_A_Class
WBPaper00030839:Embryo_Pan_Neuronal
WBPaper00030839:Larval_A_Class
WBPaper00030839:Larval_Pan_Neuronal
WBPaper00031003:0hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00031252:AIN-1_IP_enriched
WBPaper00031252:AIN-2_IP_enriched
WBPaper00031532:Larva_Pan_Neuronal_Enriched
WBPaper00032165:differentially_expressed_with_age_medoid_2
WBPaper00032948:StarveUp2
WBPaper00035084:embryo_enriched_AIN-2_IP
WBPaper00035084:L3_enriched_AIN-2_IP
WBPaper00035227:heat_shock_regulated
WBPaper00035905:FBF-1_Associated
WBPaper00036286:Pattern_B
WBPaper00037611:RNP-8-associated
WBPaper00038231:Cry5B_1.5-fold_upregulated
WBPaper00040858:eQTL_regulated_old
WBPaper00040858:eQTL_regulated_reproductive
WBPaper00041174:environmental
WBPaper00041174:genotypic
WBPaper00041174:genotypic_and_environmental
WBPaper00041207:CE_dauer_up
WBPaper00041939:control_vs_EtBr-exposed_3h
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00042331:a-SWCNTs_downregulated
WBPaper00044535:male_upregulated
WBPaper00046853:AOBr_M.aeruginosa-batch-culture_upregulated
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00053236:Starvation_regulated_GR1307
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_MD
[cgc5767]:expression_class_MD_pd(PC32)
[cgc5767]:expression_class_SM
[cgc5767]:expression_class_SMD
InteractionWBInteraction000211268
WBInteraction000301643
WBInteraction000427810
WBInteraction000431279
Map_infoPositivePositive_cloneF13C5Inferred_automaticallyFrom sequence, transcript, pseudogene data
Interpolated_map_positionX-19.5753
MethodGene