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WormBase Tree Display for Gene: WBGene00016088

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Name Class

WBGene00016088SMapS_parentSequenceC25B8
IdentityVersion2
NameCGC_nameclec-266Person_evidenceWBPerson2531
Sequence_nameC25B8.4
Molecular_nameC25B8.4a
C25B8.4a.1
CE27087
C25B8.4b
CE34259
C25B8.4c
CE34260
C25B8.4b.1
C25B8.4c.1
Other_nameCELE_C25B8.4Accession_evidenceNDBBX284606
Public_nameclec-266
DB_infoDatabaseAceViewgeneXH236
WormQTLgeneWBGene00016088
WormFluxgeneWBGene00016088
NDBlocus_tagCELE_C25B8.4
PanthergeneCAEEL|WormBase=WBGene00016088|UniProtKB=H2KZ07
familyPTHR22802
NCBIgene180932
RefSeqproteinNM_001029256.4
NM_001392791.1
NM_001029257.5
TREEFAMTREEFAM_IDTF316271
TrEMBLUniProtAccH2KZ06
H2KZ07
Q7Z121
UniProt_GCRPUniProtAccH2KZ07
SpeciesCaenorhabditis elegans
HistoryVersion_change128 May 2004 13:30:57WBPerson1971EventImportedInitial conversion from CDS class of stlace from WS125
209 Oct 2007 15:40:28WBPerson2970Name_changeCGC_nameclec-266
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classclec
AlleleWBVar00240683
WBVar01498964
WBVar01881642
WBVar01881643
WBVar01881644
WBVar01155465
WBVar01155466
WBVar01155467
WBVar01155468
WBVar01155469
WBVar01155470
WBVar01155471
WBVar01155472
WBVar01155473
WBVar01155474
WBVar01155475
WBVar01155476
WBVar01155477
WBVar01155478
WBVar01155479
WBVar00034211
WBVar01155480
WBVar01155481
WBVar01155482
WBVar01155483
WBVar00034216
WBVar01155484
WBVar01155485
WBVar01926993
WBVar01926994
WBVar01155486
WBVar01155487
WBVar01155488
WBVar01155489
WBVar01155490
WBVar01155491
WBVar01155492
WBVar01601869
WBVar01155493
WBVar01155494
WBVar01155495
WBVar01758661
WBVar02146697
WBVar02139473
WBVar00506546
WBVar00506547
WBVar02139474
WBVar02139475
WBVar00506548
WBVar00506549
WBVar00506550
WBVar00506551
WBVar00506552
WBVar00506553
WBVar00506554
WBVar00506555
WBVar00506556
WBVar00506557
WBVar00506558
WBVar02116440
WBVar02156378
WBVar01487101
WBVar00091707
WBVar01848915
WBVar00236074
WBVar01945603
WBVar00249309
WBVar01469412
WBVar01550367
WBVar01550368
WBVar01550369
WBVar01500067
StrainWBStrain00036366
WBStrain00051150
RNASeq_FPKM (74)
GO_annotation00022014
00022015
00022016
Ortholog (45)
ParalogWBGene00007152Caenorhabditis elegansFrom_analysisPanther
WBGene00007709Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00007729Caenorhabditis elegansFrom_analysisPanther
WBGene00007820Caenorhabditis elegansFrom_analysisPanther
WBGene00007822Caenorhabditis elegansFrom_analysisPanther
WBGene00008203Caenorhabditis elegansFrom_analysisPanther
WBGene00009156Caenorhabditis elegansFrom_analysisTreeFam
WBGene00011668Caenorhabditis elegansFrom_analysisPanther
WBGene00012621Caenorhabditis elegansFrom_analysisPanther
WBGene00014117Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00016912Caenorhabditis elegansFrom_analysisPanther
WBGene00019606Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00017322Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
WBGene00023502Caenorhabditis elegansFrom_analysisPanther
WBGene00019738Caenorhabditis elegansFrom_analysisPanther
WBGene00044790Caenorhabditis elegansFrom_analysisPanther
WBGene00019328Caenorhabditis elegansFrom_analysisPanther
WBGene00021603Caenorhabditis elegansFrom_analysisPanther
WBGene00021602Caenorhabditis elegansFrom_analysisPanther
WBGene00017772Caenorhabditis elegansFrom_analysisPanther
WBGene00255469Caenorhabditis elegansFrom_analysisPanther
WBGene00019914Caenorhabditis elegansFrom_analysisPanther
WBGene00017199Caenorhabditis elegansFrom_analysisPanther
WBGene00018692Caenorhabditis elegansFrom_analysisPanther
WormBase-Compara
Structured_descriptionAutomated_descriptionPredicted to enable carbohydrate binding activity. Predicted to be located in external side of plasma membrane. Expressed in intestinal cell.Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSC25B8.4a
C25B8.4b
C25B8.4c
Corresponding_transcriptC25B8.4a.1
C25B8.4b.1
C25B8.4c.1
Other_sequenceGE625313.1
CRC04609_1
Oden_isotig22084
CR07117
GE626085.1
CRC05725_1
GE626570.1
GE625727.1
GE625068.1
Associated_feature (20)
Experimental_infoRNAi_resultWBRNAi00041161Inferred_automaticallyRNAi_primary
WBRNAi00001487Inferred_automaticallyRNAi_primary
WBRNAi00011147Inferred_automaticallyRNAi_primary
WBRNAi00029183Inferred_automaticallyRNAi_primary
WBRNAi00041162Inferred_automaticallyRNAi_primary
WBRNAi00041164Inferred_automaticallyRNAi_primary
Expr_patternExpr12639
Expr1019626
Expr1036874
Expr1145193
Expr2010158
Expr2028401
Drives_constructWBCnstr00022346
WBCnstr00028333
Construct_productWBCnstr00022346
WBCnstr00028333
Microarray_results (32)
Expression_cluster (351)
Interaction (169)
Map_infoMapXPosition-2.71813Error0.008827
PositivePositive_cloneC25B8Inferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00031686
WBPaper00038491
WBPaper00055090
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene