WormBase Tree Display for Gene: WBGene00016061

WBGene00016061 SMap: S_parent: Sequence: C24G6
  Identity: Version: 2
    Name: CGC_name: hpo-15 Paper_evidence: WBPaper00038231
          Person_evidence: WBPerson26
      Sequence_name: C24G6.6
      Molecular_name: C24G6.6
        C24G6.6.1
        CE17462
        C24G6.6.2
        C24G6.6.3
      Other_name: CELE_C24G6.6 Accession_evidence: NDB BX284605
      Public_name: hpo-15
    DB_info: Database: AceView gene 5F990
        WormQTL gene WBGene00016061
        WormFlux gene WBGene00016061
        NDB locus_tag CELE_C24G6.6
        Panther gene CAEEL|WormBase=WBGene00016061|UniProtKB=O76383
          family PTHR10742
        NCBI gene 178934
        RefSeq protein NM_072055.8
        TREEFAM TREEFAM_ID TF318348
        TrEMBL UniProtAcc O76383
        UniProt_GCRP UniProtAcc O76383
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:56 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 26 Apr 2011 13:31:47 WBPerson2970 Name_change: CGC_name: hpo-15
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: hpo
    Allele (56)
    RNASeq_FPKM (74)
    GO_annotation: 00038296
      00038297
      00121742
    Ortholog: WBGene00058928 Caenorhabditis remanei From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00030975 Caenorhabditis briggsae From_analysis: Hillier-set
            OrthoMCL
            OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00150575 Caenorhabditis brenneri From_analysis: OMA
            TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00099803 Pristionchus pacificus From_analysis: OMA
            Inparanoid_8
            WormBase-Compara
      WBGene00191299 Caenorhabditis brenneri From_analysis: TreeFam
            WormBase-Compara
      WBGene00134567 Caenorhabditis japonica From_analysis: Inparanoid_8
            WormBase-Compara
      WBGene00118393 Pristionchus pacificus From_analysis: Inparanoid_8
            WormBase-Compara
      CBOVI.g1401 Caenorhabditis bovis From_analysis: WormBase-Compara
      CSP21.g3859 Caenorhabditis parvicauda From_analysis: WormBase-Compara
      CSP26.g8894 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g15827 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g14167 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g17996 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g6532 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP38.g8256 Caenorhabditis quiockensis From_analysis: WormBase-Compara
      CSP39.g8426 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g24640 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_07789.g21110 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cni-hpo-15 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g16176 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00402.g10810 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_12035 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_017749 Caenorhabditis remanei From_analysis: WormBase-Compara
      OTIPU.nOt.2.0.1.g00821 Oscheius tipulae From_analysis: WormBase-Compara
      Pan_g20147 Panagrellus redivivus From_analysis: WormBase-Compara
      Sp34_50195300 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrV_pilon.g14256 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00256841 Strongyloides ratti From_analysis: WormBase-Compara
      SGD:S000004622 Saccharomyces cerevisiae From_analysis: OrthoFinder
            OrthoInspector
            SonicParanoid
      FB:FBgn0002036 Drosophila melanogaster From_analysis: Hieranoid
            OMA
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
      FB:FBgn0033584 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0035943 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0036749 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0036750 Drosophila melanogaster From_analysis: Hieranoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      FB:FBgn0037606 Drosophila melanogaster From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-030131-5768 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-031201-3 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-090312-204 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      ZFIN:ZDB-GENE-081104-436 Danio rerio From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      HGNC:15862 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
      HGNC:20837 Homo sapiens From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      MGI:1916983 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            PhylomeDB
            SonicParanoid
      MGI:2445356 Mus musculus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            SonicParanoid
      RGD:1561125 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            Panther
            SonicParanoid
      RGD:1306049 Rattus norvegicus From_analysis: Hieranoid
            Inparanoid
            OrthoFinder
            OrthoInspector
            PhylomeDB
            SonicParanoid
    Paralog: WBGene00000139 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000137 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00000138 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00005010 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00011615 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00019154 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Automated_description: Predicted to enable polyamine oxidase activity. Human ortholog(s) of this gene implicated in lung non-small cell carcinoma. Is an ortholog of human PAOX (polyamine oxidase) and SMOX (spermine oxidase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model: DOID:3908 Homo sapiens Inferred_automatically: Inferred by orthology to human genes with DO annotation (HGNC:20837)
  Molecular_info: Corresponding_CDS: C24G6.6
    Corresponding_transcript: C24G6.6.1
      C24G6.6.2
      C24G6.6.3
    Other_sequence (27)
    Associated_feature: WBsf652630
      WBsf652631
      WBsf652632
      WBsf233684
  Experimental_info: RNAi_result: WBRNAi00091508 Inferred_automatically: RNAi_primary
      WBRNAi00088739 Inferred_automatically: RNAi_primary
      WBRNAi00029153 Inferred_automatically: RNAi_primary
      WBRNAi00011120 Inferred_automatically: RNAi_primary
      WBRNAi00088632 Inferred_automatically: RNAi_primary
      WBRNAi00041103 Inferred_automatically: RNAi_primary
      WBRNAi00085294 Inferred_automatically: RNAi_primary
      WBRNAi00066615 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1020560
      Expr1036862
      Expr1145138
      Expr2012559
      Expr2030796
    Drives_construct: WBCnstr00028352
    Construct_product: WBCnstr00028352
    Microarray_results (23)
    Expression_cluster (252)
    Interaction (138)
  Map_info: Map: V Position: -1.74087 Error: 0.007229
    Positive: Positive_clone: C24G6 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00030371
    WBPaper00038491
    WBPaper00055090
    WBPaper00065331
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene