WormBase Tree Display for Gene: WBGene00015216

WBGene00015216 SMap: S_parent: Sequence: B0496
  Identity: Version: 2
    Name: CGC_name: valv-1 Person_evidence: WBPerson81
      Sequence_name: B0496.7
      Molecular_name: B0496.7
        B0496.7.1
        CE06719
      Other_name: CELE_B0496.7 Accession_evidence: NDB BX284604
      Public_name: valv-1
    DB_info: Database: AceView gene 4I208
        WormQTL gene WBGene00015216
        WormFlux gene WBGene00015216
        NDB locus_tag CELE_B0496.7
        Panther gene CAEEL|WormBase=WBGene00015216|UniProtKB=Q17522
          family PTHR24215
        NCBI gene 182010
        RefSeq protein NM_068786.7
        TrEMBL UniProtAcc Q17522
        UniProt_GCRP UniProtAcc Q17522
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:55 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 17 Aug 2007 13:50:11 WBPerson2970 Name_change: CGC_name: valv-1
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: valv
    Allele (13)
    Strain: WBStrain00048361
    RNASeq_FPKM (74)
    GO_annotation: 00058333
      00058334
      00058335
      00058336
      00058337
      00058338
      00058339
    Ortholog (29)
    Paralog: WBGene00003375 Caenorhabditis elegans From_analysis: Panther
      WBGene00017644 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00000438 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00002987 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00002988 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003000 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00003167 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006654 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00006824 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00022518 Caenorhabditis elegans From_analysis: WormBase-Compara
    Structured_description: Concise_description: valv-1 encodes one of two C. elegans small LIM domain-containing proteins related to the mammalian CRIP (Cysteine-Rich Intestinal Protein) family of proteins; in C. elegans, valv-1 activity is required for normal functioning of the valves connecting the pharynx to the intestine, the intestine to the rectum, and the uterus to the spermatheca; a valv-1::gfp promoter fusion is expressed in the pharyngeal-intestinal valve, the spermathecal-uterine valve, the intestinal-rectal valve, the vulva, and the pharynx, seam cells, and gonadal sheath cells; valv-1 expression in the excretory canal cell can partially rescue the canal morphology defects seen in exc-9 mutants. Paper_evidence: WBPaper00027309
            WBPaper00031650
          Curator_confirmed: WBPerson1843
          Date_last_updated: 18 Nov 2008 00:00:00
      Automated_description: Predicted to enable zinc ion binding activity. Involved in digestive system process and egg-laying behavior. Predicted to be located in cytoplasm. Is an ortholog of human CRIP1 (cysteine rich protein 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: B0496.7
    Corresponding_transcript: B0496.7.1
    Other_sequence (85)
    Associated_feature: WBsf230262
    Transcription_factor: WBTranscriptionFactor000266
  Experimental_info: RNAi_result: WBRNAi00115812 Inferred_automatically: RNAi_primary
      WBRNAi00009820 Inferred_automatically: RNAi_primary
      WBRNAi00077723 Inferred_automatically: RNAi_primary
      WBRNAi00028180 Inferred_automatically: RNAi_primary
      WBRNAi00039125 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr5077
      Expr1023349
      Expr1036517
      Expr1143280
      Expr2017956
      Expr2036092
    Drives_construct: WBCnstr00002674
      WBCnstr00028997
    Construct_product: WBCnstr00028997
    Microarray_results (18)
    Expression_cluster (265)
    Interaction (14)
  Map_info: Map: IV Position: 3.3362 Error: 0.000526
    Positive: Positive_clone: B0496 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00027309
    WBPaper00030670
    WBPaper00031650
    WBPaper00038491
    WBPaper00055090
    WBPaper00061133
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene