WormBase Tree Display for Gene: WBGene00002987
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| WBGene00002987 | SMap | S_parent | Sequence | ZC64 | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | lim-4 | Person_evidence | WBPerson545 | |||||
| Sequence_name | ZC64.4 | ||||||||
| Molecular_name | ZC64.4a | ||||||||
| ZC64.4a.1 | |||||||||
| CE25675 | |||||||||
| ZC64.4b | |||||||||
| CE51976 | |||||||||
| ZC64.4c | |||||||||
| CE52031 | |||||||||
| ZC64.4b.1 | |||||||||
| ZC64.4c.1 | |||||||||
| Other_name | nss-1 | Paper_evidence | WBPaper00026818 | ||||||
| CELE_ZC64.4 | Accession_evidence | NDB | BX284606 | ||||||
| Public_name | lim-4 | ||||||||
| DB_info | Database | AceView | gene | XE490 | |||||
| WormQTL | gene | WBGene00002987 | |||||||
| WormFlux | gene | WBGene00002987 | |||||||
| NDB | locus_tag | CELE_ZC64.4 | |||||||
| Panther | gene | CAEEL|WormBase=WBGene00002987|UniProtKB=G5EEA1 | |||||||
| family | PTHR24208 | ||||||||
| NCBI | gene | 180672 | |||||||
| RefSeq | protein | NM_076268.2 | |||||||
| NM_001351878.2 | |||||||||
| NM_001351879.2 | |||||||||
| SwissProt | UniProtAcc | G5EEA1 | |||||||
| UniProt_GCRP | UniProtAcc | G5EEA1 | |||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 07 Apr 2004 11:29:30 | WBPerson1971 | Event | Imported | Initial conversion from geneace | ||
| 2 | 19 Dec 2005 14:58:13 | WBPerson2970 | Event | Acquires_merge | WBGene00003820 | ||||
| Name_change | Other_name | nss-1 | |||||||
| Acquires_merge | WBGene00003820 | ||||||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | lim | ||||||||
| Allele (81) | |||||||||
| Strain | WBStrain00001913 | ||||||||
| WBStrain00023455 | |||||||||
| WBStrain00029156 | |||||||||
| WBStrain00005258 | |||||||||
| WBStrain00049271 | |||||||||
| In_cluster | conserved_RDE-1_cluster | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (24) | |||||||||
| Ortholog (38) | |||||||||
| Paralog | WBGene00000438 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003167 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00003000 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006654 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00002989 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| WBGene00002988 | Caenorhabditis elegans | From_analysis | TreeFam | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00006824 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00015216 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00017644 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| WBGene00022518 | Caenorhabditis elegans | From_analysis | WormBase-Compara | ||||||
| Structured_description | Concise_description | lim-4 encodes a LIM homeodomain protein homologous to murine Lhx6 and L3/Lhx7, and to Drosophila ARROWHEAD; LIM-4 is required for differentiation of AWB chemosensory neurons, for several but not all aspects of RID motor neuron differentiation, expression of ser-2, repulsion from chemosensory repellants, SAA neurite outgrowth, and normal locomotion and head foraging; lim-4 is expressed in AWB, RID, RIV, RMDL, RMDR, RMEV, four SAA neurons, and four SIA neurons. | Paper_evidence | WBPaper00003593 | |||||
| WBPaper00006180 | |||||||||
| Curator_confirmed | WBPerson567 | ||||||||
| Date_last_updated | 17 Jun 2004 00:00:00 | ||||||||
| Automated_description | Enables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process. Located in nucleus. Expressed in several structures, including ABalpppppa; head muscle; head neurons; lumbar neurons; and somatic nervous system. Is an ortholog of human LHX6 (LIM homeobox 6) and LHX8 (LIM homeobox 8). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Molecular_info | Corresponding_CDS | ZC64.4a | |||||||
| ZC64.4b | |||||||||
| ZC64.4c | |||||||||
| Corresponding_transcript | ZC64.4a.1 | ||||||||
| ZC64.4b.1 | |||||||||
| ZC64.4c.1 | |||||||||
| Other_sequence (14) | |||||||||
| Associated_feature | WBsf653872 | ||||||||
| WBsf670378 | |||||||||
| WBsf670379 | |||||||||
| WBsf978715 | |||||||||
| WBsf1004755 | |||||||||
| WBsf237227 | |||||||||
| WBsf237228 | |||||||||
| Gene_product_binds | WBsf979152 | ||||||||
| WBsf979153 | |||||||||
| WBsf979156 | |||||||||
| Transcription_factor | WBTranscriptionFactor000525 | ||||||||
| Experimental_info | RNAi_result | WBRNAi00093991 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00021755 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00059017 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern (16) | |||||||||
| Drives_construct | WBCnstr00000961 | ||||||||
| WBCnstr00001663 | |||||||||
| WBCnstr00002702 | |||||||||
| WBCnstr00005147 | |||||||||
| WBCnstr00006276 | |||||||||
| WBCnstr00006356 | |||||||||
| WBCnstr00012900 | |||||||||
| WBCnstr00036303 | |||||||||
| Construct_product | WBCnstr00000961 | ||||||||
| WBCnstr00005147 | |||||||||
| WBCnstr00036303 | |||||||||
| WBCnstr00038818 | |||||||||
| Microarray_results (18) | |||||||||
| Expression_cluster (135) | |||||||||
| Interaction (81) | |||||||||
| Map_info | Map | X | Position | -9.21387 | Error | 0.024615 | |||
| Positive | Positive_clone | ZC64 | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Mapping_data | Multi_point | 4205 | |||||||
| 4476 | |||||||||
| Pseudo_map_position | |||||||||
| Reference (64) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
