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WormBase Tree Display for Gene: WBGene00002987

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Name Class

WBGene00002987SMapS_parentSequenceZC64
IdentityVersion2
NameCGC_namelim-4Person_evidenceWBPerson545
Sequence_nameZC64.4
Molecular_nameZC64.4a
ZC64.4a.1
CE25675
ZC64.4b
CE51976
ZC64.4c
CE52031
ZC64.4b.1
ZC64.4c.1
Other_namenss-1Paper_evidenceWBPaper00026818
CELE_ZC64.4Accession_evidenceNDBBX284606
Public_namelim-4
DB_infoDatabaseAceViewgeneXE490
WormQTLgeneWBGene00002987
WormFluxgeneWBGene00002987
NDBlocus_tagCELE_ZC64.4
PanthergeneCAEEL|WormBase=WBGene00002987|UniProtKB=G5EEA1
familyPTHR24208
NCBIgene180672
RefSeqproteinNM_076268.2
NM_001351878.2
NM_001351879.2
SwissProtUniProtAccG5EEA1
UniProt_GCRPUniProtAccG5EEA1
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:30WBPerson1971EventImportedInitial conversion from geneace
219 Dec 2005 14:58:13WBPerson2970EventAcquires_mergeWBGene00003820
Name_changeOther_namenss-1
Acquires_mergeWBGene00003820
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classlim
Allele (81)
StrainWBStrain00001913
WBStrain00023455
WBStrain00029156
WBStrain00005258
WBStrain00049271
In_clusterconserved_RDE-1_cluster
RNASeq_FPKM (74)
GO_annotation (24)
Ortholog (38)
ParalogWBGene00000438Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003167Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00003000Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006654Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00002989Caenorhabditis elegansFrom_analysisTreeFam
WBGene00002988Caenorhabditis elegansFrom_analysisTreeFam
Panther
WormBase-Compara
WBGene00006824Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00015216Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00017644Caenorhabditis elegansFrom_analysisWormBase-Compara
WBGene00022518Caenorhabditis elegansFrom_analysisWormBase-Compara
Structured_descriptionConcise_descriptionlim-4 encodes a LIM homeodomain protein homologous to murine Lhx6 and L3/Lhx7, and to Drosophila ARROWHEAD; LIM-4 is required for differentiation of AWB chemosensory neurons, for several but not all aspects of RID motor neuron differentiation, expression of ser-2, repulsion from chemosensory repellants, SAA neurite outgrowth, and normal locomotion and head foraging; lim-4 is expressed in AWB, RID, RIV, RMDL, RMDR, RMEV, four SAA neurons, and four SIA neurons.Paper_evidenceWBPaper00003593
WBPaper00006180
Curator_confirmedWBPerson567
Date_last_updated17 Jun 2004 00:00:00
Automated_descriptionEnables DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Involved in several processes, including cell differentiation; positive regulation of transcription by RNA polymerase II; and serotonin biosynthetic process. Located in nucleus. Expressed in several structures, including ABalpppppa; head muscle; head neurons; lumbar neurons; and somatic nervous system. Is an ortholog of human LHX6 (LIM homeobox 6) and LHX8 (LIM homeobox 8).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSZC64.4a
ZC64.4b
ZC64.4c
Corresponding_transcriptZC64.4a.1
ZC64.4b.1
ZC64.4c.1
Other_sequence (14)
Associated_featureWBsf653872
WBsf670378
WBsf670379
WBsf978715
WBsf1004755
WBsf237227
WBsf237228
Gene_product_bindsWBsf979152
WBsf979153
WBsf979156
Transcription_factorWBTranscriptionFactor000525
Experimental_infoRNAi_resultWBRNAi00093991Inferred_automaticallyRNAi_primary
WBRNAi00021755Inferred_automaticallyRNAi_primary
WBRNAi00059017Inferred_automaticallyRNAi_primary
Expr_pattern (16)
Drives_constructWBCnstr00000961
WBCnstr00001663
WBCnstr00002702
WBCnstr00005147
WBCnstr00006276
WBCnstr00006356
WBCnstr00012900
WBCnstr00036303
Construct_productWBCnstr00000961
WBCnstr00005147
WBCnstr00036303
WBCnstr00038818
Microarray_results (18)
Expression_cluster (135)
InteractionWBInteraction000002219
WBInteraction000003245
WBInteraction000003521
WBInteraction000003808
WBInteraction000003809
WBInteraction000003811
WBInteraction000003812
WBInteraction000003813
WBInteraction000003891
WBInteraction000003996
WBInteraction000005516
WBInteraction000005704
WBInteraction000005705
WBInteraction000009587
WBInteraction000009715
WBInteraction000028226
WBInteraction000028332
WBInteraction000028624
WBInteraction000029342
WBInteraction000029415
WBInteraction000031047
WBInteraction000038124
WBInteraction000039765
WBInteraction000046075
WBInteraction000046775
WBInteraction000126776
WBInteraction000138018
WBInteraction000138057
WBInteraction000147193
WBInteraction000147194
WBInteraction000147200
WBInteraction000147215
WBInteraction000147224
WBInteraction000160358
WBInteraction000165146
WBInteraction000165542
WBInteraction000165903
WBInteraction000165971
WBInteraction000166306
WBInteraction000166308
WBInteraction000166477
WBInteraction000200035
WBInteraction000224252
WBInteraction000245488
WBInteraction000265126
WBInteraction000323874
WBInteraction000336620
WBInteraction000343824
WBInteraction000376536
WBInteraction000392795
WBInteraction000404633
WBInteraction000407344
WBInteraction000411499
WBInteraction000418298
WBInteraction000427625
WBInteraction000433328
WBInteraction000434298
WBInteraction000437446
WBInteraction000444459
WBInteraction000501398
WBInteraction000502214
WBInteraction000502215
WBInteraction000502216
WBInteraction000502217
WBInteraction000502218
WBInteraction000502219
WBInteraction000505558
WBInteraction000520905
WBInteraction000520934
WBInteraction000526394
WBInteraction000529827
WBInteraction000529906
WBInteraction000531472
WBInteraction000532150
WBInteraction000532486
WBInteraction000534789
WBInteraction000534819
WBInteraction000534824
WBInteraction000541008
WBInteraction000544014
WBInteraction000556630
Map_infoMapXPosition-9.21387Error0.024615
PositivePositive_cloneZC64Inferred_automaticallyFrom sequence, transcript, pseudogene data
Mapping_dataMulti_point4205
4476
Pseudo_map_position
Reference (64)
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene