WormBase Tree Display for Gene: WBGene00013220
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| WBGene00013220 | SMap | S_parent | Sequence | Y54G11A | |||||
|---|---|---|---|---|---|---|---|---|---|
| Identity | Version | 2 | |||||||
| Name | CGC_name | ctl-3 | Person_evidence | WBPerson30576 | |||||
| Sequence_name | Y54G11A.13 | ||||||||
| Molecular_name | Y54G11A.13a | ||||||||
| Y54G11A.13a.1 | |||||||||
| CE22478 | |||||||||
| Y54G11A.13b | |||||||||
| CE48795 | |||||||||
| Y54G11A.13b.1 | |||||||||
| Other_name | CELE_Y54G11A.13 | Accession_evidence | NDB | BX284602 | |||||
| Public_name | ctl-3 | ||||||||
| DB_info | Database (12) | ||||||||
| Species | Caenorhabditis elegans | ||||||||
| History | Version_change | 1 | 26 May 2004 16:54:54 | WBPerson1971 | Event | Imported | Initial conversion from CDS class of WS125 | ||
| 2 | 13 Apr 2005 09:39:07 | WBPerson2970 | Name_change | CGC_name | ctl-3 | ||||
| Status | Live | ||||||||
| Gene_info | Biotype | SO:0001217 | |||||||
| Gene_class | ctl | ||||||||
| Allele (40) | |||||||||
| Strain | WBStrain00032346 | ||||||||
| RNASeq_FPKM (74) | |||||||||
| GO_annotation (19) | |||||||||
| Ortholog (42) | |||||||||
| Paralog | WBGene00000830 | Caenorhabditis elegans | From_analysis | TreeFam | |||||
| Inparanoid_8 | |||||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| WBGene00000831 | Caenorhabditis elegans | From_analysis | Inparanoid_8 | ||||||
| Panther | |||||||||
| WormBase-Compara | |||||||||
| Structured_description | Concise_description | ctl-3 encodes one of three C. elegans catalases; CTL-3 is predicted to function as an antioxidant enzyme that protects cells from reactive oxygen species; a ctl-3 promoter gfp fusion construct is expressed in pharyngeal muscles and neuronal cell bodies; loss of ctl-3 activity via RNAi results in no obvious abnormalities. | Paper_evidence | WBPaper00005654 | |||||
| WBPaper00006515 | |||||||||
| WBPaper00024497 | |||||||||
| Curator_confirmed | WBPerson1843 | ||||||||
| Date_last_updated | 23 May 2006 00:00:00 | ||||||||
| Automated_description | Predicted to enable catalase activity and heme binding activity. Predicted to be involved in hydrogen peroxide catabolic process and response to hydrogen peroxide. Predicted to be located in mitochondrion and peroxisome. Expressed in pharyngeal muscle cell. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); eye disease (multiple); and lung disease (multiple). Is an ortholog of human CAT (catalase). | Paper_evidence | WBPaper00065943 | ||||||
| Curator_confirmed | WBPerson324 | ||||||||
| WBPerson37462 | |||||||||
| Inferred_automatically | This description was generated automatically by a script based on data from the WS291 version of WormBase | ||||||||
| Date_last_updated | 29 Nov 2023 00:00:00 | ||||||||
| Disease_info | Potential_model (48) | ||||||||
| Molecular_info | Corresponding_CDS | Y54G11A.13a | |||||||
| Y54G11A.13b | |||||||||
| Corresponding_transcript | Y54G11A.13a.1 | ||||||||
| Y54G11A.13b.1 | |||||||||
| Other_sequence (34) | |||||||||
| Associated_feature | WBsf650743 | ||||||||
| WBsf665282 | |||||||||
| WBsf224262 | |||||||||
| WBsf224263 | |||||||||
| Experimental_info | RNAi_result | WBRNAi00063177 | Inferred_automatically | RNAi_primary | |||||
| WBRNAi00078268 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00112317 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063176 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00063178 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00020988 | Inferred_automatically | RNAi_primary | |||||||
| WBRNAi00057425 | Inferred_automatically | RNAi_primary | |||||||
| Expr_pattern | Expr2931 | ||||||||
| Expr1021386 | |||||||||
| Expr1035880 | |||||||||
| Expr1160859 | |||||||||
| Drives_construct | WBCnstr00005460 | ||||||||
| WBCnstr00011025 | |||||||||
| WBCnstr00029724 | |||||||||
| Construct_product | WBCnstr00005460 | ||||||||
| WBCnstr00011025 | |||||||||
| WBCnstr00029724 | |||||||||
| Microarray_results (11) | |||||||||
| Expression_cluster (175) | |||||||||
| Interaction (63) | |||||||||
| Map_info | Map | II | Position | 22.9045 | Error | 0.000329 | |||
| Positive | Positive_clone | Y54G11A | Inferred_automatically | From sequence, transcript, pseudogene data | |||||
| Pseudo_map_position | |||||||||
| Reference (21) | |||||||||
| Remark | Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. | CGC_data_submission | |||||||
| Method | Gene |
