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WormBase Tree Display for Sequence: Y54G11A

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Name Class

Y54G11ADNAY54G11A99416
SMapS_child (11)
StructureFromSourceCHROMOSOME_II
Overlap_rightR06A499317
Overlap_leftY48B6A
Clone_left_endY54G111
R06A499317
Y54G11A1
Clone_right_endY48B658279
Y54G11A99416
DB_infoDatabaseEMBLNDB_ACAL034488
NDB_SVAL034488.3
Secondary_accessionZ98868
DB_remark[020426 dl] The region 46842..61342 was finished with the aid of sequence provided by Joy Liang of the Chalfie Lab
[121025] Sequence correction: SNP 0 bases @ 10383
[121025] Sequence correction: SNP 0 bases @ 25273
[121025] Sequence correction: SNP 0 bases @ 60136
[121025] Sequence correction WBsf268016 : Insertion G1 bases from @ 16180
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorWallis JM
From_laboratoryHX
Date_directory020424
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY54G11A
PropertiesGenomic_canonical
ChecksumMD593ead885d9f3bb9dcbdd46bcae5f9653
StatusFinished10 Nov 1998 00:00:00
Submitted17 Dec 1998 00:00:00
Annotated08 Dec 1998 00:00:00
MapSequence-IIEndsLeft8177
Right8230
Interpolated_map_positionII22.9016
Assembly_tagsFinished Left16Y54G11A
Clone left end16Y54G11
9931799322R06A4
annotation92059189First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Part of the loop of an inverted repeat sequenced only by a primer read from one clone. The sequence has been carefully checked and no evidence of compressions found.
1608516189First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Region covered by uni-directional primer reads and poor quality terminators.
2646026463First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by a terminator read from one clone. This forms part of one arm of an inverted repeat.
3662936609First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by terminator read from a single clone.
6705967059First select a Feature - [x] Unsure [ ] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [x] Other Add a comment here - Sequence from 2 terminator reads and one primer read; no read calls this base clearly.
6787967881First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by terminator read from a single clone.
8777687699First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by a single clone and short insert reads derived from that clone.
2341724400First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - 31 copies of a tandem repeat, each element 33bp long and typical sequence: AACCAATCAGCGATAAGCTACACCCACTTTTGG The size of the assembly has not been verified by restriction digest.
7236580598First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Approximately 44 copies of a tandem repeat, each element 185bp long and typical sequence: TTCGGGAATCTTTATACATCCGACAAATTCGAGTATGTTA ATATTCTGAATTGGATTCTTTTTCTCGGACATAACTGGTG TTCTGTATTCACTTATGATACGTTCGGCTGCGTACATTGG CCAAGAGTGTTCTAGTAAGAGAATTTCATTTAGAATATGA ACAATTTGGGTAATTGGAAAGTGTC Some base pair differences have been edited.
8206286122First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Approximately 24 copies of a tandem repeat, each element 166 bp and typical sequence: TCGTAATTATTCATAAGTTTGTGTTGTCTCAGAGCCATGT CTGAAAAAACAGATTTTTTTTCGAAAATTTTAAAAAGTTC GTAAAAATTGGATTTTTGACAAATCTATGCTCTCTTTTTT TGTTTGAAATTTAGTTCAGTGACAAACAATTTCAAAAATA TAATGT Some base pair differences have been edited.
8613987724First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [x] Tandem repeat [ ] Single clone region [ ] Forced join [ ] Other Add a comment here - Approximately 58 copies of a tandem repeat, each element 27bp long and typical sequence: TTTTACTCTCTGTGGCTTCCCACCATA Some base pair differences have been edited.
9475495003First select a Feature - [ ] Unsure [x] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [x] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by short insert reads derived from a single pUC clone.
Consensus Sequence4684345002Consensus Sequence derived from catalase.liang
4974346744Consensus Sequence derived from catalase.liang
5264349644Consensus Sequence derived from catalase.liang
5554352544Consensus Sequence derived from catalase.liang
5844355444Consensus Sequence derived from catalase.liang
6134358344Consensus Sequence derived from catalase.liang
Clone right end5827458279Y48B6
Finished Right9941699413Y54G11A
MethodGenomic_canonical