WormBase Tree Display for Gene: WBGene00013220

WBGene00013220 SMap: S_parent: Sequence: Y54G11A
  Identity: Version: 2
    Name: CGC_name: ctl-3 Person_evidence: WBPerson30576
      Sequence_name: Y54G11A.13
      Molecular_name: Y54G11A.13a
        Y54G11A.13a.1
        CE22478
        Y54G11A.13b
        CE48795
        Y54G11A.13b.1
      Other_name: CELE_Y54G11A.13 Accession_evidence: NDB BX284602
      Public_name: ctl-3
    DB_info: Database (12)
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 13 Apr 2005 09:39:07 WBPerson2970 Name_change: CGC_name: ctl-3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: ctl
    Allele (40)
    Strain: WBStrain00032346
    RNASeq_FPKM (74)
    GO_annotation (19)
    Ortholog (42)
    Paralog: WBGene00000830 Caenorhabditis elegans From_analysis: TreeFam
            Inparanoid_8
            Panther
            WormBase-Compara
      WBGene00000831 Caenorhabditis elegans From_analysis: Inparanoid_8
            Panther
            WormBase-Compara
    Structured_description: Concise_description: ctl-3 encodes one of three C. elegans catalases; CTL-3 is predicted to function as an antioxidant enzyme that protects cells from reactive oxygen species; a ctl-3 promoter gfp fusion construct is expressed in pharyngeal muscles and neuronal cell bodies; loss of ctl-3 activity via RNAi results in no obvious abnormalities. Paper_evidence: WBPaper00005654
            WBPaper00006515
            WBPaper00024497
          Curator_confirmed: WBPerson1843
          Date_last_updated: 23 May 2006 00:00:00
      Automated_description: Predicted to enable catalase activity and heme binding activity. Predicted to be involved in hydrogen peroxide catabolic process and response to hydrogen peroxide. Predicted to be located in mitochondrion and peroxisome. Expressed in pharyngeal muscle cell. Human ortholog(s) of this gene implicated in several diseases, including autoimmune disease (multiple); eye disease (multiple); and lung disease (multiple). Is an ortholog of human CAT (catalase). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Disease_info: Potential_model (48)
  Molecular_info: Corresponding_CDS: Y54G11A.13a
      Y54G11A.13b
    Corresponding_transcript: Y54G11A.13a.1
      Y54G11A.13b.1
    Other_sequence (34)
    Associated_feature: WBsf650743
      WBsf665282
      WBsf224262
      WBsf224263
  Experimental_info: RNAi_result: WBRNAi00063177 Inferred_automatically: RNAi_primary
      WBRNAi00078268 Inferred_automatically: RNAi_primary
      WBRNAi00112317 Inferred_automatically: RNAi_primary
      WBRNAi00063176 Inferred_automatically: RNAi_primary
      WBRNAi00063178 Inferred_automatically: RNAi_primary
      WBRNAi00020988 Inferred_automatically: RNAi_primary
      WBRNAi00057425 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr2931
      Expr1021386
      Expr1035880
      Expr1160859
    Drives_construct: WBCnstr00005460
      WBCnstr00011025
      WBCnstr00029724
    Construct_product: WBCnstr00005460
      WBCnstr00011025
      WBCnstr00029724
    Microarray_results (11)
    Expression_cluster (175)
    Interaction: WBInteraction000030963
      WBInteraction000035687
      WBInteraction000035688
      WBInteraction000035689
      WBInteraction000037982
      WBInteraction000037983
      WBInteraction000038629
      WBInteraction000044420
      WBInteraction000044421
      WBInteraction000044888
      WBInteraction000114661
      WBInteraction000144481
      WBInteraction000147582
      WBInteraction000147768
      WBInteraction000164443
      WBInteraction000175424
      WBInteraction000186534
      WBInteraction000190818
      WBInteraction000208081
      WBInteraction000211524
      WBInteraction000215507
      WBInteraction000224765
      WBInteraction000226799
      WBInteraction000237485
      WBInteraction000244517
      WBInteraction000244521
      WBInteraction000244990
      WBInteraction000255133
      WBInteraction000261655
      WBInteraction000268449
      WBInteraction000280729
      WBInteraction000287992
      WBInteraction000291176
      WBInteraction000339369
      WBInteraction000341371
      WBInteraction000345289
      WBInteraction000383207
      WBInteraction000407868
      WBInteraction000407869
      WBInteraction000446367
      WBInteraction000465590
      WBInteraction000472383
      WBInteraction000473064
      WBInteraction000473728
      WBInteraction000474407
      WBInteraction000503304
      WBInteraction000517296
      WBInteraction000517297
      WBInteraction000517298
      WBInteraction000517299
      WBInteraction000518944
      WBInteraction000521832
      WBInteraction000525305
      WBInteraction000525327
      WBInteraction000534743
      WBInteraction000539081
      WBInteraction000550109
      WBInteraction000564486
      WBInteraction000566460
      WBInteraction000566739
      WBInteraction000574246
      WBInteraction000577981
      WBInteraction000581869
  Map_info: Map: II Position: 22.9045 Error: 0.000329
    Positive: Positive_clone: Y54G11A Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference (21)
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene