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WormBase Tree Display for Gene: WBGene00013144

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Name Class

WBGene00013144SMapS_parentSequenceY53C12B
IdentityVersion2
NameCGC_namepno-1Person_evidenceWBPerson260
Sequence_nameY53C12B.2
Molecular_nameY53C12B.2
Y53C12B.2.1
CE14896
Other_nameCELE_Y53C12B.2Accession_evidenceNDBBX284602
Public_namepno-1
DB_infoDatabaseAceViewgene2K30
WormQTLgeneWBGene00013144
WormFluxgeneWBGene00013144
NDBlocus_tagCELE_Y53C12B.2
PanthergeneCAEEL|WormBase=WBGene00013144|UniProtKB=O18216
familyPTHR12826
NCBIgene174534
RefSeqproteinNM_063698.5
SwissProtUniProtAccO18216
TREEFAMTREEFAM_IDTF300114
UniProt_GCRPUniProtAccO18216
SpeciesCaenorhabditis elegans
HistoryVersion_change126 May 2004 16:54:54WBPerson1971EventImportedInitial conversion from CDS class of WS125
213 Nov 2017 15:54:28WBPerson1983Name_changeCGC_namepno-1
StatusLive
Gene_infoBiotypeSO:0001217
Gene_classpno
Allele (61)
StrainWBStrain00051193
WBStrain00051907
RNASeq_FPKM (74)
GO_annotation00031718
00031719
00031720
00031721
00031722
00031723
00031724
00120072
00120073
Contained_in_operonCEOP2452
Ortholog (35)
Structured_descriptionAutomated_descriptionPredicted to enable RNA binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleolus. Predicted to be part of small-subunit processome. Is an ortholog of human PNO1 (partner of NOB1 homolog).Paper_evidenceWBPaper00065943
Curator_confirmedWBPerson324
WBPerson37462
Inferred_automaticallyThis description was generated automatically by a script based on data from the WS291 version of WormBase
Date_last_updated29 Nov 2023 00:00:00
Molecular_infoCorresponding_CDSY53C12B.2
Corresponding_transcriptY53C12B.2.1
Other_sequence (80)
Associated_featureWBsf665965
WBsf665966
WBsf665967
WBsf989133
WBsf1012894
WBsf223699
WBsf223700
WBsf223701
Experimental_infoRNAi_resultWBRNAi00076812Inferred_automaticallyRNAi_primary
WBRNAi00057256Inferred_automaticallyRNAi_primary
WBRNAi00075896Inferred_automaticallyRNAi_primary
WBRNAi00009378Inferred_automaticallyRNAi_primary
WBRNAi00037405Inferred_automaticallyRNAi_primary
WBRNAi00106944Inferred_automaticallyRNAi_primary
Expr_patternExpr1027618
Expr1035835
Expr1160693
Expr2007837
Expr2026077
Drives_constructWBCnstr00029745
Construct_productWBCnstr00029745
Microarray_results (15)
Expression_clusterWBPaper00028451:Low_abundance_spermatogenesis_enriched
WBPaper00032528:L3_enriched
WBPaper00037950:AVE-neuron_L1-larva_expressed
WBPaper00037950:bodywall-muscle_L2-larva_expressed
WBPaper00037950:bodywall-muscle_larva_enriched
WBPaper00037950:CEP-sheath-cells_Day1-adult_expressed
WBPaper00037950:dopaminergic-neurons_L3-L4-larva_expressed
WBPaper00037950:excretory-cell_L2-larva_expressed
WBPaper00037950:GABAergic-motor-neurons_L2-larva_expressed
WBPaper00037950:glr-1(+)-neurons_L2-larva_expressed
WBPaper00037950:hypodermis_L3-L4-larva_expressed
WBPaper00037950:hypodermis_larva_enriched
WBPaper00037950:intestine_L1-larva_expressed
WBPaper00037950:intestine_L2-larva_expressed
WBPaper00037950:PVD-OLL-neurons_L3-L4-larva_expressed
WBPaper00040221:DAF-12_target_ALF4
WBPaper00040412:germline-regulated_daf-12_target
WBPaper00044736:flat_dev_expression
WBPaper00045314:S.aureus-induced_N2
WBPaper00045521:Gender_Neutral
WBPaper00045774:clk-1_upregulated
WBPaper00046497:B.thuringiensis_0.1mix_upregulated_12h
WBPaper00046497:B.thuringiensis_0.5mix_upregulated_12h
WBPaper00048910:mRNA-interacting_protein
WBPaper00048923:Aging_regulated
WBPaper00048988:neuron_expressed
WBPaper00049545:cco-1(RNAi)_downregulated
WBPaper00049545:sur-5p-jmjd-1.2(+)_downregulated
WBPaper00050468:hlh-30-dependent_Cry5B_regulated
WBPaper00050488:adult_vs_dauer_regulated_N2_20C
WBPaper00050488:mir-34(gk437)_vs_mir-34(OverExpression)_regulated_dauer_20C
WBPaper00050990:arcade_intestinal-valve_expressed
WBPaper00050990:body-muscle_expressed
WBPaper00050990:GABAergic-neuron_expressed
WBPaper00050990:hypodermis_expressed
WBPaper00050990:intestine_expressed
WBPaper00050990:NMDA-neuron_expressed
WBPaper00050990:pharynx_expressed
WBPaper00050990:seam_expressed
WBPaper00051039:germline_enriched
WBPaper00051245:epidermis_cytoplasm_expressed
WBPaper00052884:emb-4(hc60)_upregulated
WBPaper00053184:sma-2(rax5)_upregulated
WBPaper00053184:sma-4(rax3)_upregulated
WBPaper00053321:embryo-to-L1_upregulated_nos-1(gv5)nos-2(RNAi)_SMARTseq
WBPaper00053321:embryo-to-L1_upregulated_WT_SMARTseq
WBPaper00053388:dauer_regulated_Cluster2
WBPaper00053599:oocyte_vs_mitosis_upregulated
WBPaper00055049:S.gordonii_downregulated
WBPaper00055354:Rapamycin-Rifampicin-Psora_upregulated
WBPaper00055354:Rifampicin-Allantoin_upregulated
WBPaper00055648:germline_expressed
WBPaper00055971:nhl-2(ok818)_25C_downregulated
WBPaper00056471:S.aureus-4h_upregulated_N2
WBPaper00056826:SGP_biased
WBPaper00057041:unc-70(cas983)_downregulated
WBPaper00058691:sin-3(tm1276)_downregulated
WBPaper00059254:CSR-1_interacting
WBPaper00060014:set-2(zr2012)_upregulated
WBPaper00060278:atp-2(RNAi)_upregulated
WBPaper00061274:hypergravity_15xg_downregulated
WBPaper00061479:HDA-1_interacting_protein
WBPaper00061527:F53F4.11_10656-F44G4.1
WBPaper00062193:skn-1(RNAi)_upregulated
WBPaper00062293:isp-1(qm150)_downregulated
WBPaper00062325:etr-1(lq61)_downregulated
WBPaper00062498:PPM-1.D_interacting
WBPaper00062520:qui-1(db104)_downregulated
WBPaper00063930:BRD-1_interacting
WBPaper00064005:starvation_upregulated_aptf-1(gk794)_mRNA
WBPaper00064005:starvation_upregulated_N2_mRNA
WBPaper00064071:NHR-49_interacting
WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
WBPaper00064716:paraquat_upregulated
WBPaper00065120:body-muscle-transcriptome
WBPaper00065373:Cisplatin_downregulated_WT
WBPaper00065373:sek-1(km4)_downregulated_cisplatin
WBPaper00065373:sek-1(km4)_downregulated_Ref
WBPaper00065841:11_0
WBPaper00065945:epidermis-rpoa-2(-)_downregulated_protein
WBPaper00024393:strongly_regulated_dauer_genes
WBPaper00025032:cluster_13
WBPaper00025141:N2_Expressed_Genes
WBPaper00026929:sir-2.1_overexpression_regulated
WBPaper00026980:intestine_enriched
WBPaper00031003:24hr_muscle_depleted
WBPaper00031003:total_muscle_depleted
WBPaper00032948:StarveUp3
WBPaper00035227:heat_shock_regulated
WBPaper00036429:glp-1(oz112)_upregulated
WBPaper00040603:tdp-1(lf)_down_vs_N2_FC_1.2
WBPaper00041939:control_vs_EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_48h
WBPaper00041939:control_vs_UVC-EtBr-exposed_51h
WBPaper00041939:EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_EtBr-exposed_51h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_48h
WBPaper00041939:UVC-EtBr-exposed_vs_UVC-exposed_51h
WBPaper00047070:DAF-16-dependent_UV_response
WBPaper00047070:N2_starvation_upregulated
WBPaper00048989:eat-2(ad465)_rapamycin_downregulated
WBPaper00050538:Fasting_upregulated
WBPaper00053236:Starvation_regulated_N2
[cgc5767]:expression_class_M
[cgc5767]:expression_class_SM
Interaction (194)
Map_infoMapIIPosition1.70646
PositivePositive_cloneY53C12BInferred_automaticallyFrom sequence, transcript, pseudogene data
Pseudo_map_position
ReferenceWBPaper00038491
WBPaper00049828
WBPaper00055090
WBPaper00058216
RemarkMap position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC.CGC_data_submission
MethodGene