WormBase Tree Display for Gene: WBGene00012715

WBGene00012715 SMap: S_parent: Sequence: Y39E4B
  Identity: Version: 2
    Name: CGC_name: snpc-1.2 Person_evidence: WBPerson2290
      Sequence_name: Y39E4B.2
      Molecular_name: Y39E4B.2
        Y39E4B.2.1
        CE21714
      Other_name: CELE_Y39E4B.2 Accession_evidence: NDB BX284603
      Public_name: snpc-1.2
    DB_info: Database: AceView gene 3O256
        WormQTL gene WBGene00012715
        WormFlux gene WBGene00012715
        NDB locus_tag CELE_Y39E4B.2
        Panther gene CAEEL|WormBase=WBGene00012715|UniProtKB=Q9U2K7
          family PTHR15131
        NCBI gene 176734
        RefSeq protein NM_067318.5
        TREEFAM TREEFAM_ID TF317804
        TrEMBL UniProtAcc Q9U2K7
        UniProt_GCRP UniProtAcc Q9U2K7
    Species: Caenorhabditis elegans
    History: Version_change: 1 26 May 2004 16:54:54 WBPerson1971 Event: Imported: Initial conversion from CDS class of WS125
        2 04 Jul 2013 14:01:25 WBPerson2970 Name_change: CGC_name: snpc-1.2
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snpc
    Allele (50)
    RNASeq_FPKM (74)
    GO_annotation: 00099345
      00099346
      00099347
      00099348
    Ortholog: WBGene00025353 Caenorhabditis briggsae From_analysis: OrthoMCL
            Inparanoid_8
            WormBase-Compara
      WBGene00057479 Caenorhabditis remanei From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00149077 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00140203 Caenorhabditis brenneri From_analysis: TreeFam
            Inparanoid_8
            WormBase-Compara
      WBGene00142519 Caenorhabditis brenneri From_analysis: OMA
      WBGene00217804 Caenorhabditis japonica From_analysis: TreeFam
            WormBase-Compara
      WBGene00123410 Caenorhabditis japonica From_analysis: Inparanoid_8
      WBGene00222261 Brugia malayi From_analysis: WormBase-Compara
      CSP26.g9110 Caenorhabditis zanzibari From_analysis: WormBase-Compara
      CSP28.g8580 Caenorhabditis panamensis From_analysis: WormBase-Compara
      CSP29.g16386 Caenorhabditis becei From_analysis: WormBase-Compara
      CSP31.g9714 Caenorhabditis uteleia From_analysis: WormBase-Compara
      CSP32.g7428 Caenorhabditis sulstoni From_analysis: WormBase-Compara
      CSP39.g17565 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP39.g41 Caenorhabditis waitukubuli From_analysis: WormBase-Compara
      CSP40.g5120 Caenorhabditis tribulationis From_analysis: WormBase-Compara
      Cang_2012_03_13_00277.g8348 Caenorhabditis angaria From_analysis: WormBase-Compara
      Cnig_chr_II.g6507 Caenorhabditis nigoni From_analysis: WormBase-Compara
      Csp11.Scaffold629.g11204 Caenorhabditis tropicalis From_analysis: WormBase-Compara
      Csp5_scaffold_00182.g6471 Caenorhabditis sinica From_analysis: WormBase-Compara
      FL83_05951 Caenorhabditis latens From_analysis: WormBase-Compara
      GCK72_005904 Caenorhabditis remanei From_analysis: WormBase-Compara
      Sp34_20086400 Caenorhabditis inopinata From_analysis: WormBase-Compara
      chrIII_pilon.g9295 Caenorhabditis elegans From_analysis: WormBase-Compara
      WBGene00246913 Onchocerca volvulus From_analysis: WormBase-Compara
      ZFIN:ZDB-GENE-040426-716 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
            PhylomeDB
      ZFIN:ZDB-GENE-040426-1031 Danio rerio From_analysis: EnsEMBL-Compara
            Inparanoid
            Panther
            PhylomeDB
      HGNC:11134 Homo sapiens From_analysis: EnsEMBL-Compara
            OMA
            Panther
            PhylomeDB
      MGI:1922877 Mus musculus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
      RGD:1304671 Rattus norvegicus From_analysis: EnsEMBL-Compara
            Panther
            PhylomeDB
    Paralog: WBGene00015513 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019894 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00017265 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: Y39E4B.2
    Corresponding_transcript: Y39E4B.2.1
    Other_sequence: CBC07405_1
      MC00813
      CR01551
      MC01226
      CRC03671_1
    Associated_feature: WBsf651567
      WBsf666497
      WBsf667567
      WBsf978911
      WBsf994821
      WBsf227720
      WBsf227721
    Transcription_factor: WBTranscriptionFactor001093
  Experimental_info: RNAi_result: WBRNAi00056241 Inferred_automatically: RNAi_primary
      WBRNAi00056244 Inferred_automatically: RNAi_primary
      WBRNAi00113562 Inferred_automatically: RNAi_primary
      WBRNAi00036945 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr1027728
      Expr1035625
      Expr1159728
      Expr2015957
      Expr2034192
    Drives_construct: WBCnstr00029862
    Construct_product: WBCnstr00029862
    Microarray_results (18)
    Expression_cluster (151)
    Interaction (11)
  Map_info: Map: III Position: 20.9838
    Positive: Positive_clone: Y39E4B Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene