WormBase Tree Display for Gene: WBGene00017265

WBGene00017265 SMap: S_parent: Sequence: F08F3
  Identity: Version: 2
    Name: CGC_name: snpc-1.3 Person_evidence: WBPerson2290
      Sequence_name: F08F3.9
      Molecular_name: F08F3.9a
        F08F3.9a.1
        CE30743
        F08F3.9b
        CE09264
        F08F3.9b.1
      Other_name: CELE_F08F3.9 Accession_evidence: NDB BX284605
      Public_name: snpc-1.3
    DB_info: Database: AceView gene 5F916
        WormQTL gene WBGene00017265
        WormFlux gene WBGene00017265
        NDB locus_tag CELE_F08F3.9
        Panther gene CAEEL|WormBase=WBGene00017265|UniProtKB=Q7JNN6
          family PTHR15131
        NCBI gene 178929
        RefSeq protein NM_001028601.2
            NM_001028602.3
        TREEFAM TREEFAM_ID TF317804
        TrEMBL UniProtAcc Q7JNN6
            Q22950
        UniProt_GCRP UniProtAcc Q7JNN6
    Species: Caenorhabditis elegans
    History: Version_change: 1 28 May 2004 13:30:58 WBPerson1971 Event: Imported: Initial conversion from CDS class of stlace from WS125
        2 04 Jul 2013 14:01:25 WBPerson2970 Name_change: CGC_name: snpc-1.3
    Status: Live
  Gene_info: Biotype: SO:0001217
    Gene_class: snpc
    Allele (39)
    RNASeq_FPKM (74)
    GO_annotation: 00076840
      00076841
      00076842
      00076843
    Ortholog (28)
    Paralog: WBGene00012715 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
      WBGene00015513 Caenorhabditis elegans From_analysis: Panther
            WormBase-Compara
      WBGene00019894 Caenorhabditis elegans From_analysis: TreeFam
            Panther
            WormBase-Compara
    Structured_description: Automated_description: Predicted to enable sequence-specific DNA binding activity. Predicted to be involved in snRNA transcription by RNA polymerase II and snRNA transcription by RNA polymerase III. Predicted to be part of snRNA-activating protein complex. Expressed in gonad; metacorpus; nerve ring; and terminal bulb. Is an ortholog of human SNAPC1 (small nuclear RNA activating complex polypeptide 1). Paper_evidence: WBPaper00065943
          Curator_confirmed: WBPerson324
            WBPerson37462
          Inferred_automatically: This description was generated automatically by a script based on data from the WS291 version of WormBase
          Date_last_updated: 29 Nov 2023 00:00:00
  Molecular_info: Corresponding_CDS: F08F3.9a
      F08F3.9b
    Corresponding_transcript: F08F3.9a.1
      F08F3.9b.1
    Associated_feature: WBsf718310
      WBsf1000000
      WBsf1000001
      WBsf1019630
      WBsf1019631
      WBsf233678
  Experimental_info: RNAi_result: WBRNAi00000557 Inferred_automatically: RNAi_primary
      WBRNAi00113563 Inferred_automatically: RNAi_primary
      WBRNAi00044022 Inferred_automatically: RNAi_primary
      WBRNAi00012911 Inferred_automatically: RNAi_primary
      WBRNAi00093014 Inferred_automatically: RNAi_primary
      WBRNAi00030656 Inferred_automatically: RNAi_primary
      WBRNAi00044016 Inferred_automatically: RNAi_primary
    Expr_pattern: Expr4012
      Expr7498
      Expr1011352
      Expr1147990
      Expr2015958
      Expr2034193
    Drives_construct: WBCnstr00012643
      WBCnstr00027443
    Construct_product: WBCnstr00027443
    Microarray_results (21)
    Expression_cluster (174)
    Interaction: WBInteraction000031263
      WBInteraction000031320
      WBInteraction000032062
      WBInteraction000568520
      WBInteraction000571488
      WBInteraction000571492
  Map_info: Map: V Position: -1.94455
    Positive: Positive_clone: F08F3 Inferred_automatically: From sequence, transcript, pseudogene data
    Pseudo_map_position
  Reference: WBPaper00055090
    WBPaper00061037
    WBPaper00062604
    WBPaper00063930
  Remark: Map position created from combination of previous interpolated map position (based on known location of sequence) and allele information. Therefore this is not a genetic map position based on recombination frequencies or genetic experiments. This was done on advice of the CGC. CGC_data_submission
  Method: Gene