WormBase Tree Display for Sequence: Y39E4B
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| Y39E4B | DNA | Y39E4B | 155693 | |||
|---|---|---|---|---|---|---|
| SMap | S_child | Gene_child (19) | ||||
| CDS_child (628) | ||||||
| Transcript (35) | ||||||
| Pseudogene | Y39E4B.14 | 95078 | 97467 | |||
| PCR_product (60) | ||||||
| Allele (2167) | ||||||
| Oligo_set (16) | ||||||
| Feature_object (977) | ||||||
| Feature_data | Y39E4B:Polysome | 1 | 155693 | |||
| Y39E4B:TranscriptionallyActiveRegion | 1 | 155693 | ||||
| Y39E4B:ChIPSeqTF | 1 | 155693 | ||||
| Y39E4B:TRF | 1 | 155693 | ||||
| Y39E4B:Dust | 1 | 155693 | ||||
| Y39E4B:inverted | 1 | 155693 | ||||
| Homol_data (22) | ||||||
| Structure | From | Source | CHROMOSOME_III | |||
| Overlap_right | Y43F4A | 155577 | ||||
| Overlap_left | F54F12 | |||||
| Clone_left_end | Y43F4 | 155577 | ||||
| Y39E4B | 1 | |||||
| Clone_right_end | F54F12 | 104 | ||||
| Y37D8 | 98642 | |||||
| Y39E4B | 155693 | |||||
| DB_info | Database | EMBL | NDB_AC | AL110487 | ||
| NDB_SV | AL110487.2 | |||||
| Secondary_accession | Z94158 | |||||
| DB_remark | [121025] Sequence correction: SNP 0 bases @ 88502 | |||||
| Keyword | HTG | |||||
| EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
| Origin | From_author | Barlow K | ||||
| From_laboratory | HX | |||||
| Date_directory | 981221 | |||||
| Species | Caenorhabditis elegans | |||||
| Strain | WBStrain00000001 | |||||
| Visible | Clone | Y39E4B | ||||
| Properties | Genomic_canonical | |||||
| Checksum | MD5 | 62aa6c45cae215abae44a527e947d42d | ||||
| Status | Finished | 21 Dec 1998 00:00:00 | ||||
| Submitted | 21 Dec 1998 00:00:00 | |||||
| Annotated | 30 Sep 1999 00:00:00 | |||||
| Map | Sequence-III | Ends | Left | 6477 | ||
| Right | 6551 | |||||
| Interpolated_map_position | III | 20.8841 | ||||
| Assembly_tags | Finished Left | 1 | 4 | Y39E4B | ||
| Clone right end | 101 | 104 | F54F12 | |||
| 98642 | 98637 | Y37D8 | ||||
| annotation | 47715 | 47781 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna. | |||
| 78124 | 78193 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat. | ||||
| 80403 | 80403 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [X] Other Add a comment here - Subclone from overlaping project Y37D8 reads AG. | ||||
| 153897 | 153910 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac. | ||||
| 7335 | 19367 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones. | ||||
| 48086 | 49566 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated. | ||||
| 79813 | 79823 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonications of subclone sl35a10. | ||||
| 80422 | 81212 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section. | ||||
| 125999 | 126063 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only with sonicated reads from subclone sm20b2. | ||||
| 126322 | 127111 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA. | ||||
| 128336 | 128339 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Single clone region containing sonicated reads from subclone sm19h10. | ||||
| 131108 | 131552 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains sonicated reads from subclone sm27e7 | ||||
| 132893 | 132916 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonicated reads from subclone sm30c7. | ||||
| 135559 | 136159 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat. | ||||
| Finished Right | 155689 | 155693 | Y39E4B | |||
| Clone left end | 155582 | 155577 | Y43F4 | |||
| Method | Genomic_canonical |
