Questions, Feedback & Help
Send us an email and we'll get back to you ASAP. Or you can read our Frequently Asked Questions.

WormBase Tree Display for Sequence: Y39E4B

expand all nodes | collapse all nodes | view schema

Name Class

Y39E4BDNAY39E4B155693
SMapS_childGene_child (19)
CDS_child (628)
Transcript (35)
PseudogeneY39E4B.149507897467
PCR_productTH:332B1102510103621
TH:332B36725468626
TH:332C3145307146829
TH:332C431074909
TH:332D44425946577
TH:332a18757888707
TH:334F109529097670
TH:336A22415126236
TH:338B29633397608
TH:338E3137300138677
TH:338G38516485922
TH:340b58856989315
cenix:180-e46266963475
cenix:180-f42562426480
cenix:235-a11100807100956
cenix:235-h10123993124142
cenix:332-a18757788708
cenix:332-b1102509103622
cenix:332-b36725368627
cenix:332-c3145306146830
cenix:332-c431064910
cenix:332-d44425846578
cenix:333-d89693598551
cenix:333-h92159724079
cenix:334-f109528997671
cenix:336-a22415026237
cenix:338-b29633297609
cenix:338-e3137299138678
cenix:338-g38516385923
mv_AAC13671120740137054
mv_AAC13672120740137054
mv_AAC13673120740137054
mv_Y39E4B.18643792510
mv_Y39E4B.107597885283
mv_Y39E4B.11137628139947
mv_Y39E4B.132542626211
mv_Y39E4B.149507997465
mv_Y39E4B.298540102113
mv_Y39E4B.32034832057
mv_Y39E4B.4145303146948
mv_Y39E4B.5102522105528
mv_Y39E4B.636136628
mv_Y39E4B.74029646676
mv_Y39E4B.85246366412
mv_Y39E4B.96661969834
sjj2_Y39E4B.108413485282
sjj2_Y39E4B.11137626138813
sjj2_Y39E4B.12a.1136684137535
sjj2_Y39E4B.5103471104547
sjj_Y39E4B.18639289114
sjj_Y39E4B.107724479991
sjj_Y39E4B.11137503140155
sjj_Y39E4B.132415426252
sjj_Y39E4B.149517497530
sjj_Y39E4B.4145299147089
sjj_Y39E4B.5103437105647
sjj_Y39E4B.635864980
sjj_Y39E4B.74414346551
sjj_Y39E4B.86158063271
sjj_Y39E4B.96732369822
Allele (2167)
Oligo_set (16)
Feature_object (977)
Feature_dataY39E4B:Polysome1155693
Y39E4B:TranscriptionallyActiveRegion1155693
Y39E4B:ChIPSeqTF1155693
Y39E4B:TRF1155693
Y39E4B:Dust1155693
Y39E4B:inverted1155693
Homol_data (22)
StructureFromSourceCHROMOSOME_III
Overlap_rightY43F4A155577
Overlap_leftF54F12
Clone_left_endY43F4155577
Y39E4B1
Clone_right_endF54F12104
Y37D898642
Y39E4B155693
DB_infoDatabaseEMBLNDB_ACAL110487
NDB_SVAL110487.2
Secondary_accessionZ94158
DB_remark[121025] Sequence correction: SNP 0 bases @ 88502
KeywordHTG
EMBL_dump_infoEMBL_dump_methodworm_EMBL-dump
OriginFrom_authorBarlow K
From_laboratoryHX
Date_directory981221
SpeciesCaenorhabditis elegans
StrainWBStrain00000001
VisibleCloneY39E4B
PropertiesGenomic_canonical
ChecksumMD562aa6c45cae215abae44a527e947d42d
StatusFinished21 Dec 1998 00:00:00
Submitted21 Dec 1998 00:00:00
Annotated30 Sep 1999 00:00:00
MapSequence-IIIEndsLeft6477
Right6551
Interpolated_map_positionIII20.8841
Assembly_tagsFinished Left14Y39E4B
Clone right end101104F54F12
9864298637Y37D8
annotation4771547781First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna.
7812478193First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat.
8040380403
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[ ] Single clone region
[ ] Forced join
[X] Other
Add a comment here -
Subclone from overlaping project Y37D8 reads AG.
153897153910First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac.
733519367First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones.
4808649566First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated.
7981379823
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only by sonications of subclone sl35a10.
8042281212First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section.
125999126063
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only with sonicated reads from subclone sm20b2.
126322127111First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA.
128336128339
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Single clone region containing sonicated reads from subclone sm19h10.
131108131552
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region only contains sonicated reads from subclone sm27e7
132893132916
First select a Feature -
[ ] Unsure
[X] Misc_feature
Then select the text for the note(s) -
[ ] Tandem repeat
[X] Single clone region
[ ] Forced join
[ ] Other
Add a comment here -
Region covered only by sonicated reads from subclone sm30c7.
135559136159First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat.
Finished Right155689155693Y39E4B
Clone left end155582155577Y43F4
MethodGenomic_canonical