WormBase Tree Display for Sequence: Y39E4B
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Y39E4B | DNA | Y39E4B | 155693 | |||
---|---|---|---|---|---|---|
SMap | S_child | Gene_child (19) | ||||
CDS_child (628) | ||||||
Transcript (35) | ||||||
Pseudogene | Y39E4B.14 | 95078 | 97467 | |||
PCR_product | TH:332B1 | 102510 | 103621 | |||
TH:332B3 | 67254 | 68626 | ||||
TH:332C3 | 145307 | 146829 | ||||
TH:332C4 | 3107 | 4909 | ||||
TH:332D4 | 44259 | 46577 | ||||
TH:332a1 | 87578 | 88707 | ||||
TH:334F10 | 95290 | 97670 | ||||
TH:336A2 | 24151 | 26236 | ||||
TH:338B2 | 96333 | 97608 | ||||
TH:338E3 | 137300 | 138677 | ||||
TH:338G3 | 85164 | 85922 | ||||
TH:340b5 | 88569 | 89315 | ||||
cenix:180-e4 | 62669 | 63475 | ||||
cenix:180-f4 | 25624 | 26480 | ||||
cenix:235-a11 | 100807 | 100956 | ||||
cenix:235-h10 | 123993 | 124142 | ||||
cenix:332-a1 | 87577 | 88708 | ||||
cenix:332-b1 | 102509 | 103622 | ||||
cenix:332-b3 | 67253 | 68627 | ||||
cenix:332-c3 | 145306 | 146830 | ||||
cenix:332-c4 | 3106 | 4910 | ||||
cenix:332-d4 | 44258 | 46578 | ||||
cenix:333-d8 | 96935 | 98551 | ||||
cenix:333-h9 | 21597 | 24079 | ||||
cenix:334-f10 | 95289 | 97671 | ||||
cenix:336-a2 | 24150 | 26237 | ||||
cenix:338-b2 | 96332 | 97609 | ||||
cenix:338-e3 | 137299 | 138678 | ||||
cenix:338-g3 | 85163 | 85923 | ||||
mv_AAC13671 | 120740 | 137054 | ||||
mv_AAC13672 | 120740 | 137054 | ||||
mv_AAC13673 | 120740 | 137054 | ||||
mv_Y39E4B.1 | 86437 | 92510 | ||||
mv_Y39E4B.10 | 75978 | 85283 | ||||
mv_Y39E4B.11 | 137628 | 139947 | ||||
mv_Y39E4B.13 | 25426 | 26211 | ||||
mv_Y39E4B.14 | 95079 | 97465 | ||||
mv_Y39E4B.2 | 98540 | 102113 | ||||
mv_Y39E4B.3 | 20348 | 32057 | ||||
mv_Y39E4B.4 | 145303 | 146948 | ||||
mv_Y39E4B.5 | 102522 | 105528 | ||||
mv_Y39E4B.6 | 3613 | 6628 | ||||
mv_Y39E4B.7 | 40296 | 46676 | ||||
mv_Y39E4B.8 | 52463 | 66412 | ||||
mv_Y39E4B.9 | 66619 | 69834 | ||||
sjj2_Y39E4B.10 | 84134 | 85282 | ||||
sjj2_Y39E4B.11 | 137626 | 138813 | ||||
sjj2_Y39E4B.12a.1 | 136684 | 137535 | ||||
sjj2_Y39E4B.5 | 103471 | 104547 | ||||
sjj_Y39E4B.1 | 86392 | 89114 | ||||
sjj_Y39E4B.10 | 77244 | 79991 | ||||
sjj_Y39E4B.11 | 137503 | 140155 | ||||
sjj_Y39E4B.13 | 24154 | 26252 | ||||
sjj_Y39E4B.14 | 95174 | 97530 | ||||
sjj_Y39E4B.4 | 145299 | 147089 | ||||
sjj_Y39E4B.5 | 103437 | 105647 | ||||
sjj_Y39E4B.6 | 3586 | 4980 | ||||
sjj_Y39E4B.7 | 44143 | 46551 | ||||
sjj_Y39E4B.8 | 61580 | 63271 | ||||
sjj_Y39E4B.9 | 67323 | 69822 | ||||
Allele (2167) | ||||||
Oligo_set (16) | ||||||
Feature_object (977) | ||||||
Feature_data | Y39E4B:Polysome | 1 | 155693 | |||
Y39E4B:TranscriptionallyActiveRegion | 1 | 155693 | ||||
Y39E4B:ChIPSeqTF | 1 | 155693 | ||||
Y39E4B:TRF | 1 | 155693 | ||||
Y39E4B:Dust | 1 | 155693 | ||||
Y39E4B:inverted | 1 | 155693 | ||||
Homol_data (22) | ||||||
Structure | From | Source | CHROMOSOME_III | |||
Overlap_right | Y43F4A | 155577 | ||||
Overlap_left | F54F12 | |||||
Clone_left_end | Y43F4 | 155577 | ||||
Y39E4B | 1 | |||||
Clone_right_end | F54F12 | 104 | ||||
Y37D8 | 98642 | |||||
Y39E4B | 155693 | |||||
DB_info | Database | EMBL | NDB_AC | AL110487 | ||
NDB_SV | AL110487.2 | |||||
Secondary_accession | Z94158 | |||||
DB_remark | [121025] Sequence correction: SNP 0 bases @ 88502 | |||||
Keyword | HTG | |||||
EMBL_dump_info | EMBL_dump_method | worm_EMBL-dump | ||||
Origin | From_author | Barlow K | ||||
From_laboratory | HX | |||||
Date_directory | 981221 | |||||
Species | Caenorhabditis elegans | |||||
Strain | WBStrain00000001 | |||||
Visible | Clone | Y39E4B | ||||
Properties | Genomic_canonical | |||||
Checksum | MD5 | 62aa6c45cae215abae44a527e947d42d | ||||
Status | Finished | 21 Dec 1998 00:00:00 | ||||
Submitted | 21 Dec 1998 00:00:00 | |||||
Annotated | 30 Sep 1999 00:00:00 | |||||
Map | Sequence-III | Ends | Left | 6477 | ||
Right | 6551 | |||||
Interpolated_map_position | III | 20.8841 | ||||
Assembly_tags | Finished Left | 1 | 4 | Y39E4B | ||
Clone right end | 101 | 104 | F54F12 | |||
98642 | 98637 | Y37D8 | ||||
annotation | 47715 | 47781 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region covered only from subcloned reads taken from a pcr product produced from yac dna. | |||
78124 | 78193 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region only covered by subclone sl39b10. This clone has been sequenced using both chemistries. Lies in the arm of an inverted repeat. | ||||
80403 | 80403 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [ ] Single clone region [ ] Forced join [X] Other Add a comment here - Subclone from overlaping project Y37D8 reads AG. | ||||
153897 | 153910 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Yac sequence shows 14 c's but the reads from the underlying clone F09D11 all say 13. It has been edited to the consensus of the yac. | ||||
7335 | 19367 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[X] Tandem repeat[ ] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Region contains a tandem repeat each copy is approximately 58bp and there is variation amongst the copies. Region also contains forced joins and single clones. | ||||
48086 | 49566 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[X] Single clone region[ ] Forced join[ ] OtherAdd a comment here -Single clone region covered by subclone qa58a3. This subclone has been sonicated. | ||||
79813 | 79823 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonications of subclone sl35a10. | ||||
80422 | 81212 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TAATC. Region also contains single clone section. | ||||
125999 | 126063 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only with sonicated reads from subclone sm20b2. | ||||
126322 | 127111 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Dispersed IR-2 inverted repeat similar to sequence U86947. Repeat is flanked by a tandem duplication of the sequence TATAA. | ||||
128336 | 128339 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Single clone region containing sonicated reads from subclone sm19h10. | ||||
131108 | 131552 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region only contains sonicated reads from subclone sm27e7 | ||||
132893 | 132916 | First select a Feature - [ ] Unsure [X] Misc_feature Then select the text for the note(s) - [ ] Tandem repeat [X] Single clone region [ ] Forced join [ ] Other Add a comment here - Region covered only by sonicated reads from subclone sm30c7. | ||||
135559 | 136159 | First select a Feature -[ ] Unsure[X] Misc_featureThen select the text for the note(s) -[ ] Tandem repeat[ ] Single clone region[ ] Forced join[X] OtherAdd a comment here -Some subclones show a deletion at this point. A digest on subclone sm23c6 showed two bands on the gel one of which was ~600bp smaller than the other. Region of sequence contains single direction primers. Subclone sm32e11 has totoally deleted this region which contains an inverted repeat. | ||||
Finished Right | 155689 | 155693 | Y39E4B | |||
Clone left end | 155582 | 155577 | Y43F4 | |||
Method | Genomic_canonical |